Hi All
I have enabled job metrics on a local galaxy install, with latest code from
dev branch. I have " " uncommented in job_metrics_conf.xml file:
Following are the errors in the logs:
galaxy.jobs.metrics ERROR 2016-02-24 12:28:08,741 Failed to collect job
properties for plugin
Traceback (most
Hi all - I'm creating a tool in Galaxy that takes as input several datasets
for different variables. For each variable, I want to restrict the input
to a single dataset. The docs,
https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax, indicate
type="data" needs to be set for a dataset from
Hi,
Am 24.02.2016 um 17:30 schrieb Ryan G:
> Hi all - I'm creating a tool in Galaxy that takes as input several
> datasets for different variables. For each variable, I want to restrict
> the input to a single dataset. The docs,
> https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax, indi
Next question - My custom tool take as input mulitple datasets from
different tools and collates all the information. For instance, 1 input as
tabular input, sampleManifest, another input is also tabular,
expressionData.
When the tool is display, both entries default to the most recent tabular
da
Am 24.02.2016 um 17:44 schrieb Ryan G:
> Next question - My custom tool take as input mulitple datasets from
> different tools and collates all the information. For instance, 1 input
> as tabular input, sampleManifest, another input is also tabular,
> expressionData.
>
> When the tool is displa
Dear Sir,
I used your "Convert Format" from gff file of NCBI.
but I encounter the following message.
What can I do?
Best regards,
Chang-Hyuk Yoo.
Traceback (most recent call last): File
"/home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/fml_gff3togtf/5c6f33e20fcc/fml_gff3togtf/gff_to_g
Hi Chang-Hyuk,
Looks like the traceback truncated, Could you please pass me the complete
error message from the job run, then I will have a look.
Vipin | Rätsch Lab
On Tue, Feb 23, 2016 at 11:04 PM, 유창혁 wrote:
> Dear Sir,
>
> I used your "Convert Format" from gff file of NCBI.
> but I encounte
Hi,
I was trying to plot the attached tree by using galaxy
GraPhlAn.
However, I got the following error:
Traceback (most recent call last):
File
"/net/rcstore02/ifs/rc_labs/galaxy/www/galaxy_hutlab14/galaxy-hutlab14-20150109/tools/graphlan/graphlan.py",
line 64, in
out_pad = args['pad'])
Co
*DESCRIPTION*
Multiple security vulnerabilities were recently discovered in the Tool Shed
that allow malicious actors to read and write files on the Tool Shed server
outside of normal Tool Shed repository directories.
1. A write vulnerability exists in the Tool Shed tarball and capsule upload
fun
*DESCRIPTION*
Multiple security vulnerabilities were recently discovered in Galaxy that
allow malicious actors to read and write files on the Galaxy server.
Additionally, Galaxy servers on which a rarely used feature has been
enabled are vulnerable to an arbitrary code execution exploit.
1. A wri
The Galaxy Committers team is pleased to announce the January 2016 (v16.01)
release of Galaxy. Galaxy administrators should also be aware of the
security announcements that I am posting simultaneously with this release
announcement. The release notes follow.
From: https://docs.galaxyproject.org/e
Just upgraded from the last version and after I run the run.sh script I get the
following error:
mysql_config: command not found
Traceback (most recent call last):
File "", line 1, in
File "/tmp/pip-build-xd3cnM/MySQL-python/setup.py", line 17, in
metadata, options = get
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