Hi Folks
Any recommendations for the best torque version to install on a new
setup, that plays well with pbs_python-4.4.0?
Thanks and regards!
Fourie
--
--
Prof Fourie Joubert
Centre for Bioinformatics and Computational Biology
Genomics Research Institute
University of Pretoria
f
Hey Guys,
I have seen this question being asked quite some times, but there wasn't
any definitive answers. Today I'm doing a new local install. Upon getting
the latest github repo, I still only got a small portion of galaxy main. Is
there any way to include all the tools there automatically?
Than
Hi Rui,
there is no 'mirror' button to obtain Main's toolset yet, but many pieces
are in place to help you with this.
Please see the following answers for guides and links:
https://biostar.usegalaxy.org/p/11338/
https://biostar.usegalaxy.org/p/19660/
Thanks,
Martin
On Mon, Sep 26, 2016 at
Hi Martin,
Thanks!
The first link doesn't really work...upon going to github it gave me 404.
After I explored a bit more
it says itself that it may not work now. :-(
However the second one looks quite promising!
Cheers,
Rui
On Mon, Sep 26, 2016 at 7:55 AM, Martin Čech wrote:
> Hi Rui,
>
> th
I did see that if I click each individual tool, and then in the options, I
could find the tool xml file, but this would require manually clicking each
of it. Is there any way we could get these in batch? I shouldn't be the
first or last person that want to make an identical clone of main galaxy
ins
Hi Rui,
you can install the following suite which includes about a dozen of wrapped
samtools.
https://toolshed.g2.bx.psu.edu/view/devteam/suite_samtools_1_2/5b673ccc8747
Martin
On Mon, Sep 26, 2016 at 11:05 AM Beginner TI wrote:
> I did see that if I click each individual tool, and then in th
The link in the first answer is not up to date because things moved,
however it should be probably linking to here
https://github.com/galaxyproject/ephemeris/blob/master/ephemeris/shed_install.py
Martin
On Mon, Sep 26, 2016 at 11:02 AM Beginner TI wrote:
> Hi Martin,
>
> Thanks!
>
> The first l
Hi,
I am trying to add a new controller (an extension of User class and living in
the same directory as user.py) to Galaxy. I am trying to call it from within
user/login.mako by setting :
form_action = h.url_for( controller='NEWCONTROLLER', action='login',
use_panels=use_panels )
but Galax
Hi,
I am trying to add a new controller (an extension of User class and living in
the same directory as user.py) to Galaxy. I am trying to call it from within
user/login.mako by setting :
form_action = h.url_for( controller='NEWCONTROLLER', action='login',
use_panels=use_panels )
but Galax
Hi Rui,
You can also take a look at this repo https://github.com/
ARTbio/GalaxyKickStart, and in particular this bit
https://github.com/ARTbio/GalaxyKickStart/tree/master/
extra-files/cloud_setup.
We used this to build standalone Galaxy images on the Jetstream and Google
clouds with a toolset that
Hi,
On Fri, Sep 23, 2016 at 2:13 PM, Björn Grüning
wrote:
> Hi,
>
> Am 23.09.2016 um 10:42 schrieb Nikolaos Tur:
> > Hi,
> >
> > maybe this was discussed or documented already but I'm lost. How to tell
> > installed tools by tool_shed that I have newer version of gcc and pls
> > use that one ins
Hi Miuki,
can you please show use your tool.yaml file?
Thanks,
Bjoern
Am 18.08.2016 um 16:31 schrieb Yip, Miu ki:
> Hi all,
>
> I’m trying to import shed tools into Galaxy for Docker. When I build the
> container, I get this error message:
>
> TASK [galaxy_tools : Install Tool Shed tools]
>
Hi All,
I compiled samtools from source, and just realized that I don't have those
tool xml files. Tried to google but failed to find any samtools wrapper.
This is quite surprising since the main instance has it. Does anyone happen
to know where we could obtain those files that are used by galaxy
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