Hi all
I have noticed that confirmation dialog boxes that appear in the history
options seems to be broken. E.g., when I try to delete permanently a
history, if I click cancel in the pop-up window it still deletes the
history.
Is this some kind of bug or is it related with the browser?
Thank you
Hello all,
I would like to have the option of sorting users by last login to delete
the inactive ones. Is there any way of doing this or which files should I
modify?
Thank you!
Jose
___
Please keep all replies on the list by using "reply al
Hello all,
I have updated my Galaxy distribution today to the latest version 15.03 and
the history panel is not being shown. The history seems to be there but
Galaxy can't display the datasets. Even if I create a new history and I
run a tool the dataset is not shown. It is just displayed an error
you know what could be causing this?
Thank you again!
Best regards,
Jose
2015-04-24 14:22 GMT+02:00 Jose Juan Almagro Armenteros :
> Hello all,
>
> I have updated my Galaxy distribution today to the latest version 15.03
> and the history panel is not being shown. The history seems
Jose,
>
> Can you review (and share, maybe) the relevant part of the logs from when
> you attempt to execute a job? It'd be worth it, if you still have the
> logs, to know what the "Internal Server Error" indicated in your first
> message was, as well.
>
> -
all bug fixes have been committed,
> but it may be the best option if you need to get past this problem quickly.
>
> If you're unable to do one of the above or are still having issues after
> doing one of them, let me know and we can work on it further.
>
> Carl
>
05 and not all bug fixes have been
>>> committed, but it may be the best option if you need to get past this
>>> problem quickly.
>>>
>>> If you're unable to do one of the above or are still having issues after
>>> doing one of them, let me know and we
Hello everyone,
I am a bit stuck trying to set up a SFTP on my local Galaxy. I already have
an FTP server as described in the Galaxy wiki and in this post "
http://galacticengineer.blogspot.co.uk/2015/02/ftp-upload-to-galaxy-using-proftpd-and.html";,
which works correctly with the user authenticat
Best regards,
Jose
2015-09-08 20:27 GMT+02:00 Nate Coraor :
> On Tue, Sep 8, 2015 at 2:05 PM, Jose Juan Almagro Armenteros <
> jjalma...@gmail.com> wrote:
>
>> Hello everyone,
>>
>> I am a bit stuck trying to set up a SFTP on my local Galaxy. I already
>>
Hello all,
I have just encounter a bug with the disk-quota for many users and I run
the set_user_disk_usage.py script. It recalculated the disk usage for most
of them and now seems that everything is okay.
My question is: should I add this script as a cron job or this kind of bugs
are just someth
Hello,
I have just installed the tool "samtools_stats" from the toolshed. In the
synopsis says: "This tool runs the samtools stats command in the SAMtools
toolkit, collecting statistics from BAM files. The output can be visualized
using plot-bamstat ", but I haven't found any tool to visualize it
Hello,
I have tried to install the last version of Bismark from the toolshed and I
got an error while installing. Basically it can't install bowtie and
bowtie2 because the folder name
is written twice in the download directory. Here is the error:
File
"/steno-internal/projects/galaxy/galaxy-dist
> Am 28.10.2015 um 15:31 schrieb Jose Juan Almagro Armenteros:
> > Hello,
> >
> > I have tried to install the last version of Bismark from the toolshed
> and I
> > got an error while installing. Basically it can't install bowtie and
> > bowtie2 because the folder
e_15.07 is updated and contains git commit
>> 197c7b21b209a7b6fbdb9a8a11c232a2b88523fc (
>>
>> https://github.com/galaxyproject/galaxy/commit/197c7b21b209a7b6fbdb9a8a11c232a2b88523fc
>> )?
>>
>> Cheers,
>> Nicola
>>
>> On 28/10/15 14:53, Jose Juan Almagro Armenteros wrote:
>&
gt; releases as soon as you can.
>
> The migration is documented at
> https://wiki.galaxyproject.org/Admin/SwitchingToGithubFromBitbucket
>
> Cheers,
> Nicola
>
> On 28/10/15 16:06, Jose Juan Almagro Armenteros wrote:
>
> Hello again,
>
> I have the from Bitbu
Hello,
I am in the master branch and I recently pull all the changes to my local
Galaxy. However, when I run one tool I obtained this error:
Fatal error: Matched on Error:
Traceback (most recent call last):
File
"/steno-internal/projects/galaxy/galaxy-dist/database/job_working_directory/024/24
I have tried to remove the bx-python and numpy eggs and then I have fetched
them again but this didn't work neither.
Any idea why bx-python is not recognizing the proper numpy version?
Regards,
Jose
2015-11-27 0:53 GMT+01:00 Jose Juan Almagro Armenteros
:
> Hello,
>
> I am
possible
that, as these two versions are using different numpy versions, bx-python
is using the version from the deepTools package and not the one from the
eggs?
2015-11-27 13:03 GMT+01:00 Jose Juan Almagro Armenteros :
> I have tried to remove the bx-python and numpy eggs and then I have
> fetche
1.5.9.1.0), they
> work
> > correctly. I have reinstalled this last version but nothing. Is it
> possible
> > that, as these two versions are using different numpy versions, bx-python
> > is using the version from the deepTools package and not the one from the
> > eggs?
stalling for you? Can you confirm this error?
>
> https://github.com/galaxyproject/tools-iuc/issues/417
>
> Thanks,
> Bjoern
>
> Am 27.11.2015 um 18:21 schrieb Jose Juan Almagro Armenteros:
> > Hello Bjoern,
> >
> > Yes, that solved the proble
Hello,
I am having troubles installing the last version of the tool Trinity. I
found that I have the same error as this issue (
https://github.com/galaxyproject/galaxy/issues/1947), so I tried the
suggested solution. It didn't work, so I posted the error in the issue.
Then, I tried to change the
Jose Juan Almagro Armenteros :
> Hello,
>
> I am having troubles installing the last version of the tool Trinity. I
> found that I have the same error as this issue (
> https://github.com/galaxyproject/galaxy/issues/1947), so I tried the
> suggested solution. It didn't wo
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