Hello, I am registered as jiga...@yahoo.com in Galaxy main. recently I am
trying to save visualizations in Trackster and repeatedly getting a message
unable to save visualization.Is this something related to my PC memory ?This is
in reference to RNAseq track visualization while adding tracksGala
Hello,
Making the assumption that your data is DNA (and not RNA), the tools
under "NGS: SAM Tools" and "Operate on Genomic Intervals" can generate
coordinates of the mapped reads which then can be correlated with known
genes/ORFs from your bacterial genome (or related genomes, if you can
obta
Hi all,
I am doing cufflinks assembly of TopHat-aligned NGS reads with Refseq
gene track as reference annotation. All works, but resulting gtf files
cannot be displayed in UCSC browser. I use "display at UCSC main"
link, but get a message:"Error 500: Internal Server Error".
Has anyone expe
Hello all,
Galaxy will have a large presence at ISMB/ECCB, 3DSIG, and BOSC, all of
which start this week in Vienna. Galaxy related content includes (at
least):
1 Galaxy organized workshop on "Genomics for Non-Model Organisms"
featuring 4 talks,
7 additional talks at ISMB/ECCB and BOSC, and
> My question is how I can modify the script to accept multiple inputs (i.e.
> how do I define which files in the input folder I want to be each input) and
> if there's a way to specify runtime parameters. For instance, the workflow I
> want to execute has a filter step on a tabular input item a
Hi Joern,
I believe this is caused by the bug of extra_files of shared items
having the wrong path. It would be fixed in the upcoming week.
Thanks,
K
On Tue, Jul 12, 2011 at 5:38 AM, Joern Toedling wrote:
> Hello,
>
> I have a question regarding exporting data from Galaxy. I have written a
> t
Hi
I am sequencing a bacterial genome and have assembled my Illumina
reads (40 bp single) using bowtie with a reference genome. This
generated a sam file.
I would like to obtain a listing of the open reading frames from the
bacterial genome and the corresponding genes that they are most
similar to.
On Jul 11, 2011, at 10:04 AM, YOGESH OSTWAL wrote:
> thanks a lot.
>
> Sorry for disturbing you again.
>
> Before starting with the actual data, can I try this analysis with already
> available IP and input files of datasets of illumina from NGS repository?
why shouldn't you?
select something
Hello everyone,
I am a new user of Galaxy. I have received the data from an exome of 4 samples.
I have two reads from each sample.
I have seen the Live Quickies, and I have a general idea that I want to do. I
want to find every change in the exome of these samples. Then apply a filter to
disc
Hello,
I have a question regarding exporting data from Galaxy. I have written a
tool which creates an HTML page and an associated directory containing
pictures and text files. However, if I want to export or share the
result files, only the resulting HTML is shared/exported and not the
associ
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