Thanks for the help! I was able to successfully connect and get galaxy running.
The items I had incorrect and needed to change were:
One security group
User data with NO <>
and only a space between the : and the data (Not a tab).
Thanks f the quick responses and advice, I would have been forever
t
Colleen;
Yoy definitely only want to select a single security group: the CloudMan
one. Selecting multiple groups like uses the most conservative settings
in the union of the groups, so won't have the right ports open for CloudMan.
> The ami I've been mainly using is ami-da58aab3 (although I've tr
Hello Bin,
If your data is RNA-seq, then this tutorial can get you started with the
basics:
http://main.g2.bx.psu.edu/u/jeremy/p/galaxy-rna-seq-analysis-exercise
http://main.g2.bx.psu.edu/u/jeremy/p/transcriptome-analysis-faq
Hopefully this helps,
Best,
Jen
Galaxy team
On 9/26/11 8:46 AM, B
Hello Diana,
For the main public Galaxy server, an input sequence file of this size
should not be a problem when analyzed through the standard tools. Hard
quotas are not set at this time, but will be announced soon. Current
guidelines can be found at:
http://galaxyproject.org/wiki/Main
Hope
Hi Tao,
Yes, the resulting SAM dataset can be converted to BAM and viewed in the
GTB (Galaxy Track Browser).
http://galaxyproject.org/wiki/Learn -> scroll to "Visualization" to find:
http://galaxyproject.org/wiki/Learn/Visualization
The GTB can be reached through a different links, but one q
--
Message: 4
>Date: Mon, 26 Sep 2011 16:13:54 -0700
>From: shamsher jagat
>To: galaxy-user
>Subject: [galaxy-user] mm9 reference GTF file for Cuffcompare
>Message-ID:
>
>Content-Type: text/plain; charset="iso-8859-1"
>
>I wonder if some has mouse genome GTF fi
Oren Livne wrote:
> Dear All,
>
> We have a lot of sequencing data files whose locations and
> identifiers are managed by our home-grown webapp. We'd like to
> enable users to single-sign-on from our webapp into Galaxy (we will
> be using open ID on both systems for that). When the user opens a
>
Hi All,
I tried many times to merge two BAM files (3.3 GB and 7.7MB) using different
versions of Galaxy. But every time I only got an empty file and it showed some
info like this:
[Wed Sep 14 08:56:06 EDT 2011] net.sf.picard.sam.MergeSamFiles done. Elapsed
time: 0.02 minutes.
Runtime.totalMem
Thanks for the suggestions!
The ami I've been mainly using is ami-da58aab3 (although I've tried a
few others).
The user data may be where I am messing up: I have a few questions
I'm not clear on, I think I've tried may options here.. 1. Is cluster
name just something I make up? 2. Are the <> c
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