Main will complete the jobs eventually, though obviously that's not
particularly useful in the context of your class today. How is your cloud
instance set up? Cloud or local instances should be the best and most reliable
option for teaching with and I'd definitely like to figure out why yours
I also had a similar issue. I thought it has to do with the hurricane in
the east coat and never bothered to ask. Even small analyses (such as
running the RNA-seq analysis exercise by Jeremy Goecks) were stalled; in a
couple of instances for a day or more.
Thanks.
Tilahun
Dannon,
Thanks for getting back to me. Both the local cloud install and the
main server are frozen. Well, not exactly frozen. I can still rename
or delete jobs, etc. I can even switch histories and such, but I can't
get it to run even simple jobs - like taking a demo file and running
Fast
Can you describe more about what is broken with your cloud install?
Regarding main - the server has been under heavy load today and, while it
shouldn't remain frozen, might be slow to dispatch and, depending on the type,
execute) jobs.
-Dannon
On Nov 7, 2012, at 1:12 PM, Larry Reiter wrote:
Dear Sir or Madam,
I used to use Galaxy to analyze NGS data, but these two days I could't
login my Galaxy account, it also told me that my account has been marked
deleted, and asked me to contact the Galaxy administrator to restore my
account.
Could you help me restore my accounts because I ha
On Wed, Nov 7, 2012 at 9:52 AM, Oleksandr Moskalenko wrote:
>
> On Nov 7, 2012, at 9:47 AM, greg wrote:
>
>> Thanks, but I'm confused. How will the cluster jobs galaxy submits
>> know to use the virtual env?
>>
>> Or since all jobs are submitted as the galaxy user it will have the correct
>> on
On Nov 7, 2012, at 9:47 AM, greg wrote:
> Thanks, but I'm confused. How will the cluster jobs galaxy submits
> know to use the virtual env?
>
> Or since all jobs are submitted as the galaxy user it will have the correct
> one?
>
> -Greg
Greg,
You can configure the environment for batch job
Thanks, but I'm confused. How will the cluster jobs galaxy submits
know to use the virtual env?
Or since all jobs are submitted as the galaxy user it will have the correct one?
-Greg
On Tue, Nov 6, 2012 at 3:12 PM, Carlos Borroto wrote:
> On Tue, Nov 6, 2012 at 2:27 PM, greg wrote:
>> Could a
Hi everyone,
I have a list of genomic coodinates corresponding to exonic variants, and
I'd like to determine the exon number they are in. Some of them are known
variants but many other are not, so I can't retrieve this information by
combining my set of variants with a dataset of genomic variants
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