Hello,
I have a question regarding exporting data from Galaxy. I have written a
tool which creates an HTML page and an associated directory containing
pictures and text files. However, if I want to export or share the
result files, only the resulting HTML is shared/exported and not the
associ
Hello everyone,
I am a new user of Galaxy. I have received the data from an exome of 4 samples.
I have two reads from each sample.
I have seen the Live Quickies, and I have a general idea that I want to do. I
want to find every change in the exome of these samples. Then apply a filter to
disc
On Jul 11, 2011, at 10:04 AM, YOGESH OSTWAL wrote:
> thanks a lot.
>
> Sorry for disturbing you again.
>
> Before starting with the actual data, can I try this analysis with already
> available IP and input files of datasets of illumina from NGS repository?
why shouldn't you?
select something
Hi
I am sequencing a bacterial genome and have assembled my Illumina
reads (40 bp single) using bowtie with a reference genome. This
generated a sam file.
I would like to obtain a listing of the open reading frames from the
bacterial genome and the corresponding genes that they are most
similar to.
Hi Joern,
I believe this is caused by the bug of extra_files of shared items
having the wrong path. It would be fixed in the upcoming week.
Thanks,
K
On Tue, Jul 12, 2011 at 5:38 AM, Joern Toedling wrote:
> Hello,
>
> I have a question regarding exporting data from Galaxy. I have written a
> t
> My question is how I can modify the script to accept multiple inputs (i.e.
> how do I define which files in the input folder I want to be each input) and
> if there's a way to specify runtime parameters. For instance, the workflow I
> want to execute has a filter step on a tabular input item a
Hello all,
Galaxy will have a large presence at ISMB/ECCB, 3DSIG, and BOSC, all of
which start this week in Vienna. Galaxy related content includes (at
least):
1 Galaxy organized workshop on "Genomics for Non-Model Organisms"
featuring 4 talks,
7 additional talks at ISMB/ECCB and BOSC, and
Hi all,
I am doing cufflinks assembly of TopHat-aligned NGS reads with Refseq
gene track as reference annotation. All works, but resulting gtf files
cannot be displayed in UCSC browser. I use "display at UCSC main"
link, but get a message:"Error 500: Internal Server Error".
Has anyone expe
Hello,
Making the assumption that your data is DNA (and not RNA), the tools
under "NGS: SAM Tools" and "Operate on Genomic Intervals" can generate
coordinates of the mapped reads which then can be correlated with known
genes/ORFs from your bacterial genome (or related genomes, if you can
obta
Hello, I am registered as jiga...@yahoo.com in Galaxy main. recently I am
trying to save visualizations in Trackster and repeatedly getting a message
unable to save visualization.Is this something related to my PC memory ?This is
in reference to RNAseq track visualization while adding tracksGala
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