Re: [HCP-Users] Acquire text file with averaged volume time series for subcortical structures from cifti file

: Timothy Coalson <tsc...@mst.edu> Sent: Tuesday, September 1, 2015 8:12 PM To: Nomi, Jason Cc: hcp-users@humanconnectome.org Subject: Re: [HCP-Users] Acquire text file with averaged volume time series for subcortical structures from cifti file That is a bug in -cifti-create-dense-from-templ

Re: [HCP-Users] Acquire text file with averaged volume time series for subcortical structures from cifti file

Coalson <tsc...@mst.edu> Sent: Tuesday, September 1, 2015 9:20 PM To: Nomi, Jason Cc: hcp-users@humanconnectome.org Subject: Re: [HCP-Users] Acquire text file with averaged volume time series for subcortical structures from cifti file Your second command is different than the one I

Re: [HCP-Users] Acquire text file with averaged volume time series for subcortical structures from cifti file

From: Timothy Coalson <tsc...@mst.edu> Sent: Monday, August 31, 2015 9:12 PM To: Nomi, Jason Cc: hcp-users@humanconnectome.org Subject: Re: [HCP-Users] Acquire text file with averaged volume time series for subcortical structures from cifti file That file co

[HCP-Users] Acquire text file with averaged volume time series for subcortical structures from cifti file

Dear Experts, I am trying to acquire the averaged volume time series for subcortical structures in text file form. >From this post >http://www.mail-archive.com/hcp-users@humanconnectome.org/msg01184.html , I >assume that doing these commands : wb_command -cifti-separate

Re: [HCP-Users] Acquire text file with averaged volume time series for subcortical structures from cifti file

Thanks for the help - Jason From: Timothy Coalson <tsc...@mst.edu> Sent: Monday, August 31, 2015 6:45 PM To: Nomi, Jason Cc: hcp-users@humanconnectome.org Subject: Re: [HCP-Users] Acquire text file with averaged volume time series for subcortical structures from cift

[HCP-Users] auto-correlations

Dear Experts, I was just reading in the Smith et al. (2013) paper about correcting for autocorrelations (footnote 7) and was wondering if there were any type of corrections you would advise. I am aware that I should demean, and then normalize the individual time series before concatenating

Re: [HCP-Users] Creating a parcellated connectome from a label file

: Glasser, Matthew glass...@wusm.wustl.edu Sent: Sunday, April 26, 2015 11:57 PM To: Nomi, Jason; hcp-users@humanconnectome.org Subject: Re: [HCP-Users] Creating a parcellated connectome from a label file wb_command -cifti-parcellate is indeed the first step. The next step you could load the resulting

[HCP-Users] Creating a parcellated connectome from a label file

Dear Experts, I am trying to create a parcellated connectome from a label file based off of the Gordon et al., 2014 (Cerebral Cortex) paper. They have provided a dlabel.nii file consisting of 333 parcels in both the left (162 parcels) and right (172 parcels) hemispheres

Re: [HCP-Users] Parcellated Connectome

to high thresholding? Thanks again! Jason From: Stephen Smith st...@fmrib.ox.ac.uk Sent: Saturday, April 11, 2015 3:29 AM To: Nomi, Jason Cc: hcp-users@humanconnectome.org Subject: Re: [HCP-Users] Parcellated Connectome Hi - there are many factors that affect

[HCP-Users] Dense Connectome Time Courses

Dear HCP Experts, I have a question regarding the text files found in the dense connectome release. Are the columns found in the text files for the node time courses ordered in the same way as the melodic_IC_sum.nii.gz file? That is, I assume that column 1 in the text file represents the

Re: [HCP-Users] Using Connectome Workbench Commands

-Doctoral Researcher (BCCL Lab) Department of Psychology University of Miami 5151 San Amaro Drive: Room 114A Website: http://www.psy.miami.edu/bccl/ Email: jxn...@miami.edu From: Timothy Coalson tsc...@mst.edu Sent: Monday, October 27, 2014 5:38 PM To: Nomi, Jason Cc

[HCP-Users] Using Connectome Workbench Commands

Dear Experts, I am trying to use the workbench commands but cannot get them to work. After opening the “wb_command” file in my linux terminal, I get the message printed below. However, none of the commands work and nothing comes up when I type in the command by itself to get help. I have

[HCP-Users] More questions about Fix-preprocessed rs-fMRI data

? Dear Experts, I have a follow up question regarding this earlier thread about Fix-preprocessed rs-fMRI data. http://www.mail-archive.com/hcp-users@humanconnectome.org/msg00596.html There are 4 runs for the fix data each consisting of a 15 minute resting state .nii volume file: Rest1: LR