e other supporting program?
>
>
> Kind regards,
> *Dinal Jayasekera*
>
> PhD Candidate | InSITE Fellow
> Ammar Hawasli Lab
> Department of Biomedical Engineering | Washington University in St. Louis
>
> ----------
> *From:* Timothy Coalson
> *Sen
ering | Washington University in St. Louis
From: Timothy Coalson
Sent: Tuesday, November 13, 2018 4:50:07 PM
To: Jayasekera, Dinal
Cc: Glasser, Matthew; Dierker, Donna; hcp-users@humanconnectome.org
Subject: Re: [HCP-Users] Debugging IcaFIxProcessingBatch.sh
Yes,
were incorrect
> but it turns out these files were never created. Are these files meant to
> be created by hcp_fix?
>
>
> Kind regards,
> *Dinal Jayasekera*
>
> PhD Candidate | InSITE Fellow
> Ammar Hawasli Lab
> Department of Biomedical Engineering | Washington
Subject: Re: [HCP-Users] Debugging IcaFIxProcessingBatch.sh
The path he gave was not intended to be pasted in, the script doesn't know
about those variables, and the hcp_fix script is still using sh rather than
bash. Try the version from here:
https://github.com/coalsont/Pipelines/tree
>
>
> Kind regards,
> *Dinal Jayasekera*
>
> PhD Candidate | InSITE Fellow
> Ammar Hawasli Lab
> Department of Biomedical Engineering | Washington University in St. Louis
>
> ------
> *From:* Glasser, Matthew
> *Sent:* Friday, November 9, 2018 7:36:59 PM
>
inal; Dierker, Donna; hcp-users@humanconnectome.org
Subject: Re: [HCP-Users] Debugging IcaFIxProcessingBatch.sh
We should change that line to use this file:
${StudyFolder}/${Subject}/MNINonLinear/brainmask_fs.nii.gz
Matt.
From: Timothy Coalson mailto:tsc...@mst.edu>>
Date: Friday, November 9
mailto:dinal.jayasek...@wustl.edu>>, "Dierker,
Donna" mailto:do...@wustl.edu>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Debugging IcaFIxProcessingBatch.sh
Here
wustl.edu>
> Cc: "Dierker, Donna" , "hcp-users@humanconnectome.org" <
> hcp-users@humanconnectome.org>
>
> Subject: Re: [HCP-Users] Debugging IcaFIxProcessingBatch.sh
>
> This is the first problem I see in the text you pasted in the email:
>
>
ot;hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Debugging IcaFIxProcessingBatch.sh
This is the first problem I see in the text you pasted in the email:
Mask and image must be the same size
This
rtment of Biomedical Engineering | Washington University in St. Louis
>
> --
> *From:* Timothy Coalson
> *Sent:* Thursday, November 8, 2018 6:03:10 PM
> *To:* Jayasekera, Dinal
> *Cc:* Dierker, Donna; hcp-users@humanconnectome.org
>
> *Subject:* Re: [HCP-
From: Timothy Coalson
Sent: Thursday, November 8, 2018 6:03:10 PM
To: Jayasekera, Dinal
Cc: Dierker, Donna; hcp-users@humanconnectome.org
Subject: Re: [HCP-Users] Debugging IcaFIxProcessingBatch.sh
FSL 6 requires openblas, and specifically a build of openblas that contains
lapack
;
> Kind regards,
> *Dinal Jayasekera*
>
> PhD Candidate | InSITE Fellow
> Ammar Hawasli Lab
> Department of Biomedical Engineering | Washington University in St. Louis
>
> --
> *From:* Dierker, Donna
> *Sent:* Saturday, November 3, 2018 7:3
To: Dierker, Donna
Cc: Glasser, Matthew; Harms, Michael; hcp-users@humanconnectome.org
Subject: Re: [HCP-Users] Debugging IcaFIxProcessingBatch.sh
Dear Donna,
I apologize for the late reply. I've been trying different approaches to solve
the errors I've been receiving. I've attached
al
> Sent: Thursday, November 1, 2018 8:35:28 PM
> To: Glasser, Matthew; Harms, Michael; hcp-users@humanconnectome.org
> Cc: NEUROSCIENCE tim
> Subject: Re: [HCP-Users] Debugging IcaFIxProcessingBatch.sh
>
> Oh yes definitely not. I also upgraded my R packages.
>
>
>
___
From: Jayasekera, Dinal
Sent: Thursday, November 1, 2018 8:35:28 PM
To: Glasser, Matthew; Harms, Michael; hcp-users@humanconnectome.org
Cc: NEUROSCIENCE tim
Subject: Re: [HCP-Users] Debugging IcaFIxProcessingBatch.sh
Oh yes definitely not. I also upgraded my R packages.
Kind regards,
D
, 2018 8:33:58 PM
To: Jayasekera, Dinal; Harms, Michael; hcp-users@humanconnectome.org
Cc: NEUROSCIENCE tim
Subject: Re: [HCP-Users] Debugging IcaFIxProcessingBatch.sh
That doesn’t discount Mike’s advice on needing to sort out R packages.
Matt.
From: "Jayasekera, Dinal"
mailto:din
:mha...@wustl.edu>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
mailto:hcp-users@humanconnectome.org>>
Cc: Timothy Coalson mailto:tsc...@mst.edu>>
Subject: Re: [HCP-Users] Debugging IcaFIxProcessingBatch.sh
Matt,
I will update my version of sI
From: Glasser, Matthew
Sent: Thursday, November 1, 2018 6:56:26 PM
To: Harms, Michael; Jayasekera, Dinal; hcp-users@humanconnectome.org
Cc: NEUROSCIENCE tim
Subject: Re: [HCP-Users] Debugging IcaFIxProcessingBatch.sh
Hi Dinal,
Also make sure you have the absolutely latest version of sICA+FIX
inal"
mailto:dinal.jayasek...@wustl.edu>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Debugging IcaFIxProcessingBatch.sh
Hi,
Have you configured your R installation corre
"hcp-users@humanconnectome.org"
Subject: [HCP-Users] Debugging IcaFIxProcessingBatch.sh
Dear HCP community,
I am currently running the IcaFixProcessingBatch script on the data processing
using the minimal functional pipelines. However, for each of my resting state
conditions, I get the following er
Dear HCP community,
I am currently running the IcaFixProcessingBatch script on the data processing
using the minimal functional pipelines. However, for each of my resting state
conditions, I get the following error:
/home/Desktop/Applications/fix1.066/fix: 252:
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