Re: [HCP-Users] Problem with wb_command -volume-parcel-resampling? dimension mismatch?

2015-04-23 Thread Timothy Coalson
your >> situation it should not be necessary. >> >> Peace, >> >> Matt. >> >> From: Keith Jamison >> Date: Thursday, April 23, 2015 at 3:21 PM >> To: "HCP-Users@humanconnectome.org" >> Subject: [HCP-Users] Problem with wb_command -volume

Re: [HCP-Users] Problem with wb_command -volume-parcel-resampling? dimension mismatch?

2015-04-23 Thread Timothy Coalson
I would suspect an orientation problem between the current and new parcel volumes, one volume being LPI and the other being RPI, or similar. Do -file-information on all the input files, and look at the orientation fields (or -nifti-information -print-header and compare the sforms). It has been a

Re: [HCP-Users] Problem with wb_command -volume-parcel-resampling? dimension mismatch?

2015-04-23 Thread Keith Jamison
y, April 23, 2015 at 3:21 PM > To: "HCP-Users@humanconnectome.org" > Subject: [HCP-Users] Problem with wb_command -volume-parcel-resampling? > dimension mismatch? > > Hi HCPers > > I'm running into an error when running SubcorticalProcessing.sh in the > fMR

Re: [HCP-Users] Problem with wb_command -volume-parcel-resampling? dimension mismatch?

2015-04-23 Thread Glasser, Matthew
; Date: Thursday, April 23, 2015 at 3:21 PM To: "HCP-Users@humanconnectome.org" <HCP-Users@humanconnectome.org> Subject: [HCP-Users] Problem with wb_command -volume-parcel-resampling? dimension mismatch? Hi HCPers I'm running into an error when running SubcorticalProce

[HCP-Users] Problem with wb_command -volume-parcel-resampling? dimension mismatch?

2015-04-23 Thread Keith Jamison
Hi HCPers I'm running into an error when running SubcorticalProcessing.sh in the fMRISurface pipeline. Specifically, when it tries to run: wb_command -volume-parcel-resampling .nii.gz ROIs/ROIs..nii.gz ROIs/Atlas_ROIs..nii.gz I get an error saying "volume spacing or dimension mismatch". I