Re: [Ifeffit] Postdoc Position

2016-07-29 Thread Bruce Ravel
___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit -- Bruce Ravel bra...@bnl.gov National Institute

Re: [Ifeffit] Multiple scattering path parameters

2016-07-29 Thread Bruce Ravel
up several papers in which people have attempted to quantify the perpendicular contribution to Delta R and sigma^2 in the case of collinear MS paths. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science

Re: [Ifeffit] determining reasonable fitting parameters

2016-07-27 Thread Bruce Ravel
brain is really tiny and it's getting to be late in the afternoon here. It's amazing that many bullet points actually made it into the email! B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group

Re: [Ifeffit] Athena Question

2016-07-27 Thread Bruce Ravel
ne kinda guy, you can use the "dlsprj" program that gets installed when you install the rest of demeter: dlsprj myproject.prj --params=bkg_eshift,bkg_delta_eshift This will print the shifts and their uncertainties to the screen. B -- Bruce Ravel --

Re: [Ifeffit] about sigma square

2016-07-26 Thread Bruce Ravel
:39 AM, Bruce Ravel <bra...@bnl.gov <mailto:bra...@bnl.gov>> wrote: It also means that the uncertainty is such that you can support your conclusion. While the red line might overplot the blue with sigma^2=0.0003+0.001, that may be a troubling result because sigma^2 is not positive def

[Ifeffit] about sigma square

2016-07-26 Thread Bruce Ravel
is probably reasonable. HTH, B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 743, Room 114 Upton NY, 11973 Homepage:http://bruceravel.github.io/home/ Software:https

Re: [Ifeffit] Help with Athena

2016-07-25 Thread Bruce Ravel
t location can be changed, but it won't happen automagically if you install gnuplot in some other way. By the way, when you say "Windows computer", what version do you actually mean? 32 bit or 64? B -- Bruce Ravel bra...@bnl.gov National In

Re: [Ifeffit] Help with Athena

2016-07-25 Thread Bruce Ravel
rovide some feedback that hints to the problem. I am suspicious that your anti-virus software might be blocking access to some file needed by gnuplot to manage fonts. That's something you might look into (or get help from your IT department). B -- Bruce Ravel

Re: [Ifeffit] Help with Athena

2016-07-25 Thread Bruce Ravel
nstall it into your normal diskspace, which is the default location. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 743, Room 114 Upton NY, 11973 Homepage:

Re: [Ifeffit] Bug Report importing file.

2016-07-25 Thread Bruce Ravel
rch. Larch does not have the 8192 limit. But you should still process the data onto a sensible grid. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 743, Room 114 Upton NY, 11973

Re: [Ifeffit] Help with Athena

2016-07-25 Thread Bruce Ravel
problem, I'll have you try some more things. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 743, Room 114 Upton NY, 11973 Homepage:http://bruceravel.github.io

Re: [Ifeffit] Help with Athena

2016-07-22 Thread Bruce Ravel
to reproduce and observe the problem In any case, even without being able to pluck a point from the plot, you have figured out the sensible work-around. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group

Re: [Ifeffit] determining reasonable fitting parameters

2016-07-21 Thread Bruce Ravel
-- if you remove the path and remove the parameter. To look at it another way: a result of "it's too disordered to measure" *is* a result. It may not be quantitative. It may not be what the boss is looking for. But it's honest and it is a result. HTH, B -- B

Re: [Ifeffit] determining reasonable fitting parameters

2016-07-21 Thread Bruce Ravel
into it soon. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 743, Room 114 Upton NY, 11973 Homepage:http://bruceravel.github.io/home/ Software:https://github.com

Re: [Ifeffit] fitting of S XANES with arctans and gaussians

2016-07-19 Thread Bruce Ravel
.html#data-types-and-energy-units If that doesn't work, let me know. As for constraints in the peak fitting, that is certainly not implemented in Athena. I am not quite sure why Alain thinks otherwise. HTH, B -- Bruce Ravel bra...@bnl.gov National

Re: [Ifeffit] Artemis Antisite Simulation

2016-07-15 Thread Bruce Ravel
re looking to plot. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 743, Room 114 Upton NY, 11973 Homepage:http://bruceravel.github.io/home/ Software:https://

Re: [Ifeffit] Artemis (FEFF) question

2016-07-12 Thread Bruce Ravel
d/dopants.html#crystal-data-with-partial-occupancy In fact, I suspect that entire page is relevant to what you are doing. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-I

[Ifeffit] Athena and Artemis on the Mac

2016-07-08 Thread Bruce Ravel
) use Athena and Artemis for his own work. Someone who is invested in the use of the software simply has to step up. I myself have neither the resources nor the interest in doing so. If no one steps up, then there simply won't be support for my software on the Mac. B -- Bruce Ravel

Re: [Ifeffit] Athena crash on mac on import

2016-07-08 Thread Bruce Ravel
db96c576a0)) called at /opt/local/lib/perl5/site_perl/5.22/darwin-thread-multi-2level/Demeter/UI/Artemis.pm line 434 Demeter::UI::Artemis::__ANON__(Wx::Frame=HASH(0x7fdb96c547c0), Wx::CommandEvent=SCALAR(0x7fdb96c576a0)) called at /opt/local/bin/Artemis line 47 eval {...} called at /opt/lo

Re: [Ifeffit] Breaking off spec files within Athena

2016-07-07 Thread Bruce Ravel
your beamline to start a new spec file for each scan. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 743, Room 114 Upton NY, 11973 Homepage:http://bruceravel.github.io

Re: [Ifeffit] Athena crash on mac on import

2016-07-01 Thread Bruce Ravel
suggested, and now I am able to open the prj file. Thanks again, George On Fri, Jul 1, 2016 at 3:17 PM, Bruce Ravel <bra...@bnl.gov <mailto:bra...@bnl.gov>> wrote: On 07/01/2016 03:00 PM, Bruce Ravel wrote: There is probably a simple-ish work-aroun

Re: [Ifeffit] Athena crash on mac on import

2016-07-01 Thread Bruce Ravel
to you. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 743, Room 114 Upton NY, 11973 Homepage:http://bruceravel.github.io/home/ Software:https://github.com

Re: [Ifeffit] Use of restraint

2016-06-22 Thread Bruce Ravel
ilman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 743, Room 114 Upton NY, 11973 Homepage:htt

Re: [Ifeffit] Athena crash on Mac when exporting empirical standard

2016-06-17 Thread Bruce Ravel
-messages -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 743, Room 114 Upton NY, 11973 Homepage:http://bruceravel.github.io/home/ Software:https://github.com/bruceravel

Re: [Ifeffit] Question about fuzzy degeneracy

2016-06-09 Thread Bruce Ravel
nsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973 Homepage:http://bruceravel.github.io

Re: [Ifeffit] Substantial problems running ATOMS in Demeter 0.9.24

2016-06-08 Thread Bruce Ravel
mething unique to my computer, but I am stumped as to what it could be as I am running a standard OS with a standard install on Demeter. Hi Jeff, I did not respond to this earlier, but I wanted to confirm that I saw your message and it's on my to-do list. Cheers,

Re: [Ifeffit] Questions

2016-06-06 Thread Bruce Ravel
... information about the problem, there is nothing I can possibly do to help. http://bruceravel.github.io/demeter/documents/SinglePage/bugs.html Robert's advice seems pretty good to me. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards

Re: [Ifeffit] atoms crashes

2016-06-03 Thread Bruce Ravel
that is certainly a bug. Thanks! For the time being, you need to be sure that the crystal data files you are attempting to read do not have things like "a = 3.839()". Cheers, B On 06/03/2016 11:12 AM, Bruce Ravel wrote: It seems as though the crystal data you gave to atoms was slightly diff

Re: [Ifeffit] atoms crashes

2016-06-03 Thread Bruce Ravel
-03 11:10 GMT-03:00 Bruce Ravel <bra...@bnl.gov <mailto:bra...@bnl.gov>>: Your atoms.inp file works for me. As I say *all* *the* *time* on this list and as I've explained clearly online (http://bruceravel.github.io/demeter/documents/SinglePage/bugs.html), you hav

Re: [Ifeffit] atoms crashes

2016-06-03 Thread Bruce Ravel
thing I did in between was to locate the log files. I tried many times before. Thank you again 2016-06-03 11:10 GMT-03:00 Bruce Ravel <bra...@bnl.gov <mailto:bra...@bnl.gov>>: Your atoms.inp file works for me. As I say *all* *the* *time* on this list and as I've explained

Re: [Ifeffit] atoms crashes

2016-06-03 Thread Bruce Ravel
sites of La, 2 sites of Fe and 4 sites of O. When I try to run Atoms from this file it crashes. This is the inp file: ## This Atoms file was generated by Demeter 0.9.24 ## Demeter written by and copyright (c) Bruce Ravel, 2006-2015 title = La4Fe3O10 (LSFC) space = I 4/m m m a = 3.83900b

Re: [Ifeffit] Problems Running Athena, Artemis and Hephaestus on P.C. with Windows 7 Enterprise Operating System

2016-05-31 Thread Bruce Ravel
u give a stab at all that before we try my other thought. Good luck, B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973 Homepage:http://bruceravel.githu

Re: [Ifeffit] Difference spectra- Ifeffit Digest, Vol 159, Issue 21

2016-05-31 Thread Bruce Ravel
Feff's Fourier components to the Fourier components in your data. If your data can be described by Feff, Artemis can do the describing. HTH, B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group

Re: [Ifeffit] Atoms on the WEB

2016-05-31 Thread Bruce Ravel
code base. It's on my list of things to do. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973 Homepage:http://bruceravel.github.io/home/ Software

Re: [Ifeffit] Regarding time resolved XAS

2016-05-31 Thread Bruce Ravel
vague and open-ended. Without more information or a more focused question, I don't know how to help you further. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973

Re: [Ifeffit] Difference spectra

2016-05-31 Thread Bruce Ravel
to understand Artemis well enough to implement the fit. But there is no magical, hidden button that says "fit my pump-probe data." B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II

Re: [Ifeffit] doubt on number of variables

2016-05-26 Thread Bruce Ravel
en because they are especially good papers. But, in each, I discuss defensibility of fitting model in a situation where there is not nearly enough information in the measured data to properly describe the actual structure of the sample. Perhaps you'll find it he

Re: [Ifeffit] Farrel Lytle IXAS XAFS database data energy calibration

2016-04-26 Thread Bruce Ravel
help in advance. Best Regards, Eva Bajnoczi ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit -- Bruce Ravel

Re: [Ifeffit] Bug report

2016-04-11 Thread Bruce Ravel
On 04/11/2016 11:32 AM, Robert Gordon wrote: how about adding a statement or two to the faq along the lines of: Make a copy of the files in the AppData\Roaming\Demeter directory for help in diagnosing what caused a file corruption. Done. Thanks. B -- Bruce Ravel

Re: [Ifeffit] Bug report

2016-04-11 Thread Bruce Ravel
saved the old Roaming folder? There is no way for me to identify the cause of this problem if I cannot identify and inspect the file that triggered the problem. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron

Re: [Ifeffit] Fuzzy degeneracy

2016-04-07 Thread Bruce Ravel
, you have to do it yourself. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973 Homepage:http://bruceravel.github.io/home/ Software:https://

[Ifeffit] frequently asked questions

2016-04-06 Thread Bruce Ravel
diff file or make a pull request, here is the source file: https://github.com/bruceravel/demeter/blob/master/documentation/SinglePage/faq.rst You'll get a copy when you clone the demeter repository or you can click the "raw" button to get the source for the faq page. Thanks in advance

Re: [Ifeffit] Ifeffit Digest, Vol 158, Issue 3

2016-04-04 Thread Bruce Ravel
require knowing things about the sample that, except in certain contrived situations, you almost certainly don't know. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY

Re: [Ifeffit] Chi(E) data export and import

2016-04-01 Thread Bruce Ravel
) back onto the energy grid was inadequate, so I don't know what else I can say that would be helpful. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973

Re: [Ifeffit] Ifeffit Digest, Vol 157, Issue 9

2016-03-14 Thread Bruce Ravel
(E). In any case, one can always interpolate one grid onto the other, so neither solution is anything more than a convenience. Cheers, B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II

Re: [Ifeffit] Exporting Athena projects data

2016-03-11 Thread Bruce Ravel
natural solution. Cheers, B Thanks and Regards Matteo, UiS ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mai

Re: [Ifeffit] Exporting Athena projects data

2016-03-11 Thread Bruce Ravel
___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit -- Bruce Ravel bra...@bnl.gov

Re: [Ifeffit] Path Missing Using Artemis

2016-03-08 Thread Bruce Ravel
was missing. Since S24g is near the core atom Cu12e and the path should exist, I was confused to send the message and hopefully get your response. As I have said many times before, that's a feature, not a bug. http://bruceravel.github.io/demeter/artug/extended/fuzzy.html B -- Bruce Ravel

Re: [Ifeffit] Collected k-space and fitting range

2016-03-04 Thread Bruce Ravel
removal and of the Fourier transform. HTH, B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973 Homepage:http://bruceravel.github.io/home/ Software

Re: [Ifeffit] Exporting Athena projects data

2016-03-04 Thread Bruce Ravel
) ascii output file? That seems to me like a natural solution. Cheers, B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973 Homepage:http

Re: [Ifeffit] Any XAFS schools in North America this year?

2016-02-28 Thread Bruce Ravel
v http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY,

Re: [Ifeffit] Problem with transfer of prj files

2016-02-22 Thread Bruce Ravel
___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit -- Bruce Ravel bra...@bnl.gov National

Re: [Ifeffit] problem with Artemis crashing on mac

2016-02-16 Thread Bruce Ravel
way, at the cost of not having an autosave feature. HTH, B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973 Homepage:http://bruceravel.github.io/home/

Re: [Ifeffit] Could you please give me some information?

2016-02-02 Thread Bruce Ravel
to attenuate the EXAFS (but maybe I am thinking about that wrongly). Perhaps it would help to show us some of the data...? B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building

Re: [Ifeffit] Athena with IOS "El Capitan"

2016-02-02 Thread Bruce Ravel
@millenia.cars.aps.anl.gov/msg05228.html is likely the same as your problem. (Try setting it to "aqua".) Here's what I mean by "setting it": http://bruceravel.github.io/demeter/aug/other/prefs.html My standard caveat of not owning a Mac myself applies here, of course.

Re: [Ifeffit] Effect of gradual thickness variation in beam

2016-01-28 Thread Bruce Ravel
(carefully aligning the sample both times, of course). If they are the same, then, then you're golden. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973 Homepag

Re: [Ifeffit] FW: Data summation - missing groups

2016-01-27 Thread Bruce Ravel
, but this is annoying if I have several components set up with corresponding weightings in a summation. You are correct. That is working wrongly. I'll look into it. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group

Re: [Ifeffit] FW: Data summation - missing groups

2016-01-27 Thread Bruce Ravel
, but this is annoying if I have several components set up with corresponding weightings in a summation. Simple fix committed at https://github.com/bruceravel/demeter/commit/9fa28926e5bd119d8d6574afa03b579647ab519b Will be in the next release. (Also easy to apply by hand, if you are so motivated.) B -- Bruce

Re: [Ifeffit] FW: Data summation - missing groups

2016-01-27 Thread Bruce Ravel
> 02076 794864 ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit -- Bruce Ravel bra...@

Re: [Ifeffit] Data summation - missing groups

2016-01-27 Thread Bruce Ravel
active-ish. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973 Homepage:http://bruceravel.github.io/home/ Software:https://github.com/brucerave

Re: [Ifeffit] XANES pre-edge vs. edge features

2016-01-25 Thread Bruce Ravel
if you were to make a synthetic sample with known quantities of Iron standards, then your methodology for the analysis of the standards and the synthetic sample should yield the same ratios that were used to make the sample. HTH, B -- Bruce Ravel bra...@b

Re: [Ifeffit] Solution to running Demeter on an ORNL computer

2015-12-17 Thread Bruce Ravel
t tested Athena-using-Larch on Windows. Next month, when I am back from my holiday, I'll try to find some time to look into it. Cheers, B I am using the 0.9.23 pre3 release. Hephaestus and Artemis also both open using Larch, though I haven't tried to use th

[Ifeffit] Mac woes

2015-12-15 Thread Bruce Ravel
-- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973 Homepage:http://bruceravel.github.io/home/ Software:https://github.com/bruceravel Demeter: http

Re: [Ifeffit] Athena 0.9.24 (64-bit) on Windows: Problems with Alignment and with plotting window

2015-12-11 Thread Bruce Ravel
g) in the wxt window shown in your screenshot. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973 Homepage:http://bruceravel.github.io/home/ Software:http

Re: [Ifeffit] Unable to export flattened normalized XANES spectra from Athena 0.9.24

2015-12-08 Thread Bruce Ravel
ers that I can find are identical in both 0.9.24 and 0.8. I have also uninstalled and reinstalled Athena 0.9.24 and the effect is still the same. Has anyone else noticed this problem? Is this a bug? Thank you, Jeff -- Bruce Ravel bra...@bnl.gov National

Re: [Ifeffit] Most probably a bug or something.

2015-11-30 Thread Bruce Ravel
/options/ifeffit -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973 Homepage:http://bruceravel.github.io/home/ Software:https://github.com/bruceravel

Re: [Ifeffit] Issue with Compatibility between versions of Athena

2015-11-26 Thread Bruce Ravel
e 1 Thank you, ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit Unsubscribe: http://millenia.cars.aps.anl.gov/mailman/options/ifeffit -- Bruce Ravel --

Re: [Ifeffit] Problem with Perl interpreter

2015-11-16 Thread Bruce Ravel
igure AV to explicitly allow Demeter to run? B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973 Homepage:http://bruceravel.github.io/home/ Sof

Re: [Ifeffit] Problem with Perl interpreter

2015-11-13 Thread Bruce Ravel
it's going to take a lot more effort to troubleshoot the problem. Good luck! B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973 Homepag

Re: [Ifeffit] Demeter under El Capitan

2015-11-13 Thread Bruce Ravel
On 11/13/2015 03:09 PM, Bruce Ravel wrote: The dependency on Encoding::FixLatin::XS is a mistake made by me. I made it a recommendation to quiet a spurious warning that happens on Windows but not on linux. (No clue about the Mac.) It's not actually used for anything and I just edited

Re: [Ifeffit] Demeter under El Capitan

2015-11-13 Thread Bruce Ravel
-- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973 Homepage:http://bruceravel.github.io/home/ Software:https://github.com/bruceravel Demeter: http

Re: [Ifeffit] Problem with Perl interpreter

2015-11-13 Thread Bruce Ravel
offer an installer package that install Demeter+it's specific dependencies on top of the Strawberry. Something to think about. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II

Re: [Ifeffit] Apparent bugs in Athena 0.9.24 running under Windows 7 64 bit

2015-11-13 Thread Bruce Ravel
or the standards; in the other one these boxes worked normally and all standards could be considered. Some screenshots are attached to this message, -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at

Re: [Ifeffit] LCF, Sayers & Bunker, R and ATHENA

2015-11-12 Thread Bruce Ravel
m so we could know that any translation was working well. I'm writing to the mailing list of several reasons: 1) A reviewer explicitly asked to contact Bruce Ravel so that the new insight could be implemented in ATHENA, 2) I was trying to combine my code with ATHENAs way of LCF before

Re: [Ifeffit] Problems with EXAFS Fitting of Metalloprotein Zinc Samples

2015-11-12 Thread Bruce Ravel
-transform k space. I think that helps put my earlier comment into proper context for you. Wonderful post, though! It is very pleasant to see a post that doesn't involve someone complaining about something related to the Mac! :) Cheers, B -- Bruce Ravel

Re: [Ifeffit] Demeter under El Capitan

2015-11-12 Thread Bruce Ravel
://millenia.cars.aps.anl.gov/pipermail/ifeffit/2015-September/012739.html Apparently setting gnuplot-->terminal to "aqua" works also. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Buildin

Re: [Ifeffit] Ifeffit Digest, Vol 153, Issue 12

2015-11-09 Thread Bruce Ravel
On 11/09/2015 02:54 PM, Bruce Ravel wrote: On 11/09/2015 02:29 PM, Robert Gordon wrote: Ah, yes...special characters...çã...Athena does not seem to like those in file names If I replace with Calibração with Calibracao in a test directory of my own, then the file opens without issue. -R. On 11

Re: [Ifeffit] Ifeffit Digest, Vol 153, Issue 9

2015-11-09 Thread Bruce Ravel
d replacing the ones installed on your computer. The files that changed to make this fix are: lib/Demeter/UI/Athena.pm lib/Demeter/UI/Athena/Summer.pm Be sure to download the "raw" file and be sure it is saved with a ".pm" extension. Regards, B -- Bruce Ravel

Re: [Ifeffit] Opening "older" data files in the latest Athena version

2015-11-09 Thread Bruce Ravel
in the last Athena version? Yes. No problems here on any of my computers. Here are some hints on how to ask a question effectively: http://bruceravel.github.com/demeter/pods/bugs.pod.html http://bruceravel.github.com/demeter/pods/help.pod.html B -- Bruce Ravel

Re: [Ifeffit] Ifeffit Digest, Vol 153, Issue 12

2015-11-09 Thread Bruce Ravel
n the path is not a problem on my linux computer and I guess I have never tested that properly on Windows. I'll look into it. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A

Re: [Ifeffit] Data Summation Bugs

2015-11-06 Thread Bruce Ravel
that I can follow, there's not much I can do to help. http://bruceravel.github.com/demeter/pods/bugs.pod.html http://bruceravel.github.com/demeter/pods/help.pod.html B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology

Re: [Ifeffit] Gnuplot CPU affinity

2015-11-04 Thread Bruce Ravel
the behavior you describe. I am away from my office (and so away from any windows computers) so I cannot look into it right now. Is there any chance that your anti-virus software is interrupting gnuplot's operation in some way? B -- Bruce Ravel bra

Re: [Ifeffit] Athena open data project but not shown the curve

2015-11-03 Thread Bruce Ravel
el.github.io/demeter/pods/bugs.pod.html B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973 Homepage:http://bruceravel.github.io/home/ Software:

Re: [Ifeffit] Athena and Artemis installation problem

2015-10-26 Thread Bruce Ravel
ctionable bug report would include those error messages, which tend to be a lot more helpful for me than this sort of narrative, which is hard for me to understand. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron

Re: [Ifeffit] Unable to run Demeter on EPA computers

2015-10-21 Thread Bruce Ravel
, Oct 14, 2015 at 5:30 PM, Bruce Ravel <bra...@bnl.gov <mailto:bra...@bnl.gov>> wrote: On 10/14/2015 05:25 PM, Matt Noerpel wrote: Thank you for your prompt reply. The Ifeffit.dll file does exist in that directory. It was last modified on 3/16/2015 and is 753 kb

Re: [Ifeffit] Demeter 0.9.23 in multi-user environments

2015-10-19 Thread Bruce Ravel
/pipermail/ifeffit/2015-August/012662.html ? Umm... no. Thanks for the reminder. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973 Homepage:http

Re: [Ifeffit] Demeter 0.9.23 in multi-user environments

2015-10-19 Thread Bruce Ravel
of the prior installation issue a dialog box so you can opt not to do the removal. Again, it will take me some time to get there. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building

Re: [Ifeffit] Demeter 0.9.23 in multi-user environments

2015-10-19 Thread Bruce Ravel
. As I said, I'll try to reproduce yours by installing in a system folder. What happens if you install to, say, C:\DemeterPerl rather than C:\Program Files\DemeterPerl? I am suspicious that something isn't happy with that space in the path B -- Bruce Ravel

Re: [Ifeffit] Demeter 0.9.23 in multi-user environments

2015-10-19 Thread Bruce Ravel
n...@millenia.cars.aps.anl.gov [mailto:ifeffit-boun...@millenia.cars.aps.anl.gov] On Behalf Of Bruce Ravel Sent: 19 October 2015 14:14 To: XAFS Analysis using Ifeffit <ifeffit@millenia.cars.aps.anl.gov> Subject: Re: [Ifeffit] Demeter 0.9.23 in multi-user environments On 10/19/2015 08:34 AM, Godf

[Ifeffit] Fwd: XAS tutorial videos

2015-10-14 Thread Bruce Ravel
f you could find a way to send me the videos, if you have them and if it is not much trouble. Thank you. Regards Wuhib PS: I received a link from Dr. Shu Hayama but as he himself guessed I am having difficulty playing and downloading the .wmv files due to probably browser/network related issues.

Re: [Ifeffit] Unable to run Demeter on EPA computers

2015-10-14 Thread Bruce Ravel
your anti-virus thing did not intercept the installation of DLL file? B PS: I am close to 100% certain that the XSLoader/DynaLoader thing is a red herring. -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Sci

Re: [Ifeffit] Unable to run Demeter on EPA computers

2015-10-14 Thread Bruce Ravel
. And tomorrow I will try installing not in the default place on some computer. Perhaps there is a problem that I simply missed or neglected B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group

Re: [Ifeffit] No plot window on Mac El Capitan

2015-10-07 Thread Bruce Ravel
ngineering Northwestern University Evanston, IL USA ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit -- Bruce Ravel bra...@bnl.gov National

Re: [Ifeffit] No plot window on Mac El Capitan

2015-10-07 Thread Bruce Ravel
On 10/07/2015 02:05 PM, Bruce Ravel wrote: George offers a work-around here: http://millenia.cars.aps.anl.gov/pipermail/ifeffit/2015-September/012739.html Also relevant: http://millenia.cars.aps.anl.gov/pipermail/ifeffit/2015-September/012742.html -- Bruce Ravel

Re: [Ifeffit] Problems importing larch plugins to python

2015-10-02 Thread Bruce Ravel
On 10/02/2015 09:09 AM, Bruce Ravel wrote: It turns out that, when you use larch as a python script (as opposed to running it through larch itself), every damn thing needs the '_larch=mylarch' argument. Johan, I explain why this is necessary at https://bruceravel.gitbooks.io/larch-plugin

Re: [Ifeffit] Problems importing larch plugins to python

2015-10-02 Thread Bruce Ravel
d inside of function. This is because that project is an automated testing framework and, in each case, the fit is called by some other script. But the structure of the fit is the same as what you are trying to do. Every call to a larch-y function needs a "_larch=mylarch".

Re: [Ifeffit] Problems importing larch plugins to python

2015-10-02 Thread Bruce Ravel
a keyboard shortcut. You will find yourself typing that A LOT as you use larch in this way. :) B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science Group at NSLS-II Building 535A Upton NY, 11973 Homepag

[Ifeffit] changes to the Demeter Windows installer

2015-10-01 Thread Bruce Ravel
t with any problems, I would be very grateful for any feedback. If your log-in name meets one of my areas of concern, I would be doubly grateful for the feedback! Those who don't want to live near the edge should use 0.9.22 or 0.9.23_pre2 for now. Thanks! B -- B

Re: [Ifeffit] Demeter version 0.9.22 do not work properly in Windows 10

2015-09-23 Thread Bruce Ravel
On 09/23/2015 03:44 PM, Pedro F B D Martins wrote: I would like to thank to Bruce Ravel and Guanghui Zhang for the suggestions. I've modified the restrictions of Demeter and all items related to it in Kaspersky, and also installed the new version of Demeter 0.9.23, which seems to be working just

Re: [Ifeffit] No plot window in Athena/Demeter on Mac OS X Yosemite

2015-09-22 Thread Bruce Ravel
t; Basically, I am wondering if the problem is that gnuplot is not working or if the problem is that Demeter's communication with gnuplot is not working. B -- Bruce Ravel bra...@bnl.gov National Institute of Standards and Technology Synchrotron Science

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