Samuel Flores wrote:
Howdy All,
I’m trying to make a button that will successively highlight different
residues on the protein. It will initially highlight, say, residue 10
but when clicked again will highlight residue 11, and then 12 and so on.
I think the way to go is to have some
Miguel wrote:
Rolf wrote:
(Jan, I believe that you asked for this a *long* time ago)
As Jan's successor at the FLI Jena (former IMB Jena) I know why he asked
for this. It will help to simplify scripting at the Jena Image Library
of Biological macromolecules.
I did not know that Jan was gone
Gunnar Vikberg wrote:
Dear Tim Driscoll and JMol Dev List,
What should the command be called?
--
If this is a script command to create bonds then it seems that it
should
be called 'bond' ... the verb bond.
Then again, the other script commands are called
Bob Hanson wrote:
Does anybody recognize the symptom that on the browser URL line
seemingly randomly the entry point backs up one character so that if
you type fast it starts to look like this:
http://www.solf.dueat
?
I observed the same kind of behaviour with Firefox 1.07/1.06 (both
Bob Hanson wrote:
Jan's observation that
connect 1.2 2.0 HBOND (carbon) (hydrogen)
may not have any observable effect, because HBONDS are by default
OFF, suggests that there is a more general problem with connect.
Specifically, what determines the displayed
radius of the bond being
Miguel wrote:
Jan (or someone else)
I would appreciate it if you could point me to one or more PDB files that
contain complicate cases of insertion codes.
In particular, I would like to have :
- insertion codes that run in descending order
1A2C
- insertion codes at the beginning or end of a
Nicolas Vervelle wrote:
I have also announced this new extension on the Folding At Home
community forums.
And I have an interesting report :
- spinning with the current version of Jmol (10.2.0) is much more CPU
intensive than with a previous version (10.00.11) that was already
used in the
Bob Hanson wrote:
Jmol Developers,
I made some changes to the JavaScript/Java interface and may be onto
something. I am no longer seeing any wild fluctuation in memory
whatsoever at the URL below. Loading reasonably large files seems to
result in only minimal memory increases. Please take a
Bob Hanson wrote:
Is everything working for you at
http://www.stolaf.edu/people/hansonr/jmol/test/proto/altloc.htm
?
Try some of those links in brackets on the left. They work? I'm
wondering if the problem with XTALX is just that it's really pushing
the whole Java/JavaScript system passing
Bob Hanson wrote:
load 1vwh alt/1VWH.cif alt/1VWH.cif;color altloc;restrict
none;select *;cartoon on
model 1001;conformation 1
model 2001;conformation 2
model 0
Do you see what that is doing?
It first loads 1VWH.cif twice as separate models, setting 1vwh as
the name displayed.
Then it
Bob Hanson wrote:
Rolf Huehne wrote:
Bob Hanson wrote:
load 1vwh alt/1VWH.cif alt/1VWH.cif;color altloc;restrict
none;select *;cartoon on
model 1001;conformation 1
model 2001;conformation 2
model 0
Do you see what that is doing?
It first loads 1VWH.cif twice as separate models
Iván Párraga García wrote:
Hi,
Most of the websites of our group use Jmol for visualizing pdb's but
I've found a little problem: Jmol seems to remove from visualization
those residues which have an insertion code. For example, we have the
pdb with id 1nmb:
snp
As you can see it has an
Bob Hanson wrote:
Wouldn't it be nice to have a link under the applet on a web page that
says, send this image to me by email or open a new window with just
this image so that you can then copy that to your book or web page that
you are producing.
Oh, and blow it up to 1000x1000, please.
Angel Herraez wrote:
El 26 Sep 2006 a las 22:10, Bob Hanson escribió:
Wouldn't it be nice to have a link under the applet on a web page that
says, send this image to me by email or open a new window with just
this image so that you can then copy that to your book or web page that
you are
Bob Hanson wrote:
We did it! With Nico's tips and a some challenging debugging, I do
believe we have a version of Jmol that can be run with no graphics
window, delivering text over sysout and graphics to files or the
clipboard. -n now really means NO display. I have some clean up to do,
but if
Hi Bob,
I tried the new 'hide' and 'display' commands and like the new
possibilities very much.
What I still don't like is that 'hide' also displays things and
'display' also hides things. It is not what you would expect from these
commands and it will make scripting more complicated in
Bob Hanson wrote:
Rolf Huehne wrote:
Hi Bob,
While testing 10.9.75 I noted the following:
1) The 'hide' command doesn't hide everything. Meshribbon and trace are
not hidden.
Rolf,
There was a bug in meshribbon that is now corrected; I can't reproduce
your problem with trace
Bob Hanson wrote:
Rolf Huehne wrote:
1) The 'hide' command doesn't hide everything. Meshribbon and trace are
not hidden.
there was a problem with dots and halos not being hidden -- now fixed.
I don't think that the selection halos should be hidden. I would guess
Bob Hanson wrote:
Rolf Huehne wrote:
Bob Hanson wrote:
Rolf Huehne wrote:
1) The 'hide' command doesn't hide everything. Meshribbon and trace are
not hidden.
there was a problem with dots and halos not being hidden -- now fixed.
I don't think that the selection
[EMAIL PROTECTED] wrote:
Just want to point out something I noticed when writing the scientific
notation compiler modification:
Generally you don't need [] around residue names --
select ALA
select LEU
but if that residue starts with a number:
5EE
2E1
then brackets have been (and continue to
[EMAIL PROTECTED] wrote:
That's a bug. I can fix that. Nothing in brackets will be a token.
But this doesn't prevent all problems. Even within brackets hetero
component names that are token names (e.g. [AND] in PDB entries
1coy,1e3r,1j99,1q22 and 3dhe) will produce an error. My current
[EMAIL PROTECTED] wrote:
Nico, let's get this prerelease out.
Well, I released 10.9.99 just before your commits in last hours.
That will be 10.9.100 this evening then.
'show state' seems to be broken in 10.9.99. I just get the following
error message (Java 1.4.2_11), trying two different
[EMAIL PROTECTED] wrote:
Hi,
Following up on the new features, it appears that
issuing 'frame all' hangs the applet or application
in this version. 11.0.RC3 works fine.
Thanks,
Dave
This problem is still present in 11.1.7.
It looks as if it has a tendency to come back after it was solved
Miguel wrote:
I made a change to the DNS servers last week. I thought that everything
went OK.
Q: Are people from other parts of the world also having problems?
From Germany I got the following error message for http://www.jmol.org/:
An error has been encountered in accessing this page.
Bob Hanson wrote:
In February of 2005 the default in Jmol was changed from zoom 100
scaling to fit the the smaller dimension (so that a model is
automatically always on screen) to scaling to fit the larger dimension
(so that a model generally goes off screen along the smaller dimension,
Angel Herraez wrote:
Mostly I think that zoomLarge true is adequate; if one has a narrow,
long molecule and sets a wide rectangular Jmol panel, one wants it to
be used (as it has happened to me with DNA).
What I don't see is why a change in applet size won't affect equally
in both cases
Bob Hanson wrote:
I would appreciate all the testing anyone can do on 11.3.60 when it gets
released later today. This should be pretty much what we want for 11.4,
which I'd like to have released by the end of the month.
TOTAL FEATURE FREEZE NOW. I promise. Just fixing bugs.
11.3.59 and
Angel Herraez wrote:
After calculate structure with a protein, there is no effect of
color structure, everything is carbon grey.
Is this a bug?
11.4.RC2
I could not reproduce the problem. When I load for example PDB entry
'1DEH' into Jmol 11.4.RC2 and then provide the following 2
Hi Bob,
I did a few tests on revision 8957 from SVN.
The font scaling with zoom and window resize seems to work very well and
really is a big improvement!
Two points I noticed:
1) The axes labels did not scale.
2) The initial font size was not identical for all labels. Although I
didn't change
Angel Herraez wrote:
El 7 Apr 2008 a las 12:28, Rolf Huehne escribió:
CTRL + Left mouse drag action add a atom ( a Carbon)
This only opened up the Jmol popup menu.
In Windows, Ctrl-click opens the menu, but Ctrl-drag adds atoms. Just
hold the mouse button.
With KDE on Linux it doesn't
Angel Herráez wrote:
I can no longer build the application. It was working and has stopped doing
so.
I was going mad until I've noticed that there are some recent commits.
Can anyone check if the problem is there?
After I updated to revision 9656 I get the following error message when
Bob Hanson wrote:
I think I have a fix for the prospect that unsigned applets can no
longer (or soon to be no longer) able to pop up a menu. My plan:
1) Add a menu bar to the console.
2) pop up the console on right-click of the mouse.
A bonus is that we can then have a top-level help
Bob Hanson wrote:
Rolf Huehne wrote:
Bob Hanson wrote:
I think I have a fix for the prospect that unsigned applets can no
longer (or soon to be no longer) able to pop up a menu. My plan:
1) Add a menu bar to the console.
2) pop up the console on right-click of the mouse.
A bonus
Bob Hanson wrote:
Forget it. Here's the deal.
It turns out that an applet can pop up a menu that consists of an
image covering the ENTIRE SCREEN.
Or a set of menus that collectively cover the entire screen.
Obviously, this is a security risk, as the screen could spoof any login
system.
Bob Hanson wrote:
Rolf Huehne wrote:
Bob Hanson wrote:
Forget it. Here's the deal.
It turns out that an applet can pop up a menu that consists of an
image covering the ENTIRE SCREEN.
Or a set of menus that collectively cover the entire screen.
Obviously, this is a security risk
Robert Hanson wrote:
[switching to jmol-developers list]
Also, I spent the weekend writing an AVI video creator. I learned a lot,
mostly how difficult it is to create real video animations. Alas, I can
write AVI files, but the JPG files required for those are a special type
that the
Egon Willighagen wrote:
On Mon, Oct 6, 2008 at 6:12 PM, Angel Herraez [EMAIL PROTECTED] wrote:
But browsing that list is more difficult then for finding your
language of choice...
Why do you think that, Egon? All except one would be strange
language names... You pick the one you understand
Rzepa, Henry wrote:
Egon has just posted download statistics for Jmol to the users list.
I suspect Jmol has been embedded in 100s, if not 1000s (or even 10Ks worth)
of journal pages. I also suspect that there must be a very wide spread of
versions in that embedding, possibly going back
Robert Hanson wrote:
OK, this is some bizarre bug in the video system. It turns out that if the
background is set to 0x0001, this odd transparent effect is created. You
can do this with any version of Jmol -- I just effected it with Jmol 10.x.11
(June, 2006).
Prior to Jmol 11.3.39, what
Robert Hanson wrote:
I'll look into changing that, Rolf, if you feel it to be important. It was
necessary to have the background distinct from any actually used color, and
this seemed to be a simple way to do it. At the time I couldn't think of a
better way. These are core functions, at the
Robert Hanson wrote:
The full chemapps documentation site is actually already at SourceForge, but
I don't update that as frequently as my own site. It's under
trunk/jmol-documentation/script_documentation -- but that's a bit old.
A mirror should be identical to the original site (at least
Robert Hanson wrote:
I've checked in all the files I have in all the main interactive script
documentation directories. If there were some way we could do this so that
that's all I have to do, it would be great. I could certainly be more
diligent about it. I didn't upload all the files in
Robert Hanson wrote:
ok, that's checked in.
Now we need a system to ensure these are synced well. What do you recommend?
On your side it is very easy. Just check in any changes with 'svn' as
soon as possible.
On the mirror side it is also not very complicated.
On Linux/Unix systems it is
Robert Hanson wrote:
wonderful!
I noticed that the date at the bottom of the documentation didn't change
in spite of some changes reported by 'svn update' on the documentation
today.
It would be better if the date would reflect the real date of the latest
change.
Regards,
Rolf
Robert Hanson wrote:
I've uploaded a new cmds.js and code.js that sets the default to 11.6 and
adds new information about some of the more recent options in Jmol 11.7.
Thank you, Bob. I have updated the mirror.
Regards,
Rolf
Hi developers,
the increasing power of Jmol is fantastic. But if this power is used
within the applet it greatly enhances the danger of freezing Jmol by an
out of memory error.
When I started to build the JenaLib Jmol Viewer interface (now Jena3D)
about 3 years ago there was only one
Robert Hanson wrote:
sorry -- pressed SEND prematurely.
Rolf, please check what I just checked in for Jmol 11.7.14. I think it
just might work for you.
-- Out of Memory errors -- Java heap space -- now caught by the
script processor and image creator.
--
Robert Hanson wrote:
Rolf and others -- I've checked in some refactoring of Viewer,
FileManager, and the adapters as well as some additional code for
handling of OOME conditions. Please check it out.
I had quite a bit of luck, but wasn't 100% successful in surviving OOM
errors with the
Angel Herraez wrote:
On top of that, the interest of VRML is questionable. The more I
read, the more opinions I find it is an obsolete format.
It might become more important again because of the possibility to
integrate interactive 3D Figures directly into a PDF document.
The following
Angel Herraez wrote:
El 18 Jan 2009 a las 21:51, Robert Hanson escribió:
comments:
-- camera angle is not correct.
I had realized that the orientation was different. Don't know
anything about that, but it is as it was in the first exporter. I
will study the vrml doc to see if I can
Angel Herráez wrote:
All this playing with the VRML export is making me think.
First we had the POV-ray export, but that's basically a sophisticated image,
right?
I don't think so. As I understood it it is rather a sophisticated 3D
format. At this URL
Juergen Haas wrote:
Dear Jmol community,
I am using Jmol to generate a png which is placed as a background picture
behind the jmol applet, such that when printing this picture would be printed
instead.
on my workstation this command works beautifully:
java -jar
Juergen Haas wrote:
Dear Jmol community,
I am using Jmol to generate a png which is placed as a background picture
behind the jmol applet, such that when printing this picture would be printed
instead.
on my workstation this command works beautifully:
java -jar
Robert Hanson wrote:
I'm not aware of that ever being an issue -- fonts certainly works
flawlessly without any display using the -n load option.
On Wed, Jan 21, 2009 at 8:38 PM, Miguel mig...@jmol.org wrote:
I strongly suspect that running 'headless' is a problem because there are
no screen
Robert Hanson wrote:
Rolf, what would be a suitable alternative to ALT_LEFT? It works so
nicely on the PC.
I used Jmol 11.6.8 and KDE 3.5.5 for testing:
Maybe you can help me identify what keys we have available for dragging? I
see:
case LEFT: rotateXY
works as expected
case
Randy Zauhar wrote:
Hi Bob,
Thanks for the reply. To clarify:
1) The version I am using is 11.6 - I will upgrade to 11.7 .
2) I perhaps gave the wrong impression that I am using 'zillions' of applets
- there are 11 to be precise (one 'query' and ten 'hit' structures).
11 Applets on
Angel Herraez wrote:
I agree with what others have replied, that 11 applets are dangerous.
In my experience (may heavily depend on the browser), reloading the
page several times is most prone to problems. Also, I have seen some
applet redraw problems when I scroll. No this is not new. You
Randy Zauhar wrote:
Bob, I think I get the idea now - I should load my initial (empty) structure
using DATA in the script that is passed to the applet when it loads, and in
that script I should include the callback.
That makes sense, but I am having the freeze problem primarily when I am
Hi,
The initial orientation of structures loaded from PDB files (e.g.: 1deh,
1jnm) has changed in 11.7.31_dev (updated from SVN a few minutes ago)
compared to 11.7.18 and 11.6.8. The structures are rotated 180 degrees
around the x-axis.
Q: Is this change intentional or is it just a bug?
On 02/18/2010 05:23 PM, Tzontonel wrote:
If I have my own structure (a normal .mol/.cif ... file), I need to see my
structure with red/cyan glasses. What should I do (open Jmol and next ...)? I
need more information about this big and useful (for me) jmol-user option -
to see structure with
On 03/11/2010 10:24 AM, P.Canepa wrote:
Hi Bob,
I'd like to create a web page just to test CRYSTAL structures with a
jmolButton like jmolButton(load ?,Load file) which pops up a file manager
to grab structures I have on my desktop!
I tried this way but it doesn't work? What am I doing
On 03/26/2010 04:15 AM, Robert Hanson wrote:
2010/3/25 Angel Herráez angel.herr...@uah.es
Bob, three small issues with the scripting doc page:
http://chemapps.stolaf.edu/jmol/docs/?fullmanual=1ver=11.10
1. the page loads 11.8 by default, not 11.10
That's intentional. 11.8 is the
that this message will contain a full copy of the comment thread,
including the initial issue submission, for this request,
not just the latest update.
Category: None
Group: None
Status: Closed
Resolution: None
Priority: 5
Private: No
Submitted By: Rolf Huehne (rhuehne)
Assigned to: Nobody
On 11/04/2010 06:52 PM, Robert Hanson wrote:
On Thu, Nov 4, 2010 at 12:24 PM, Dr. Christoph Gille
christoph.gi...@charite.de wrote:
Two questions:
1. How to specify pdb insertion codes in selections
%x
so, for example,
select %A // just the A set
select % or %A //
On 10/13/2011 04:53 PM, Moon Cheung wrote:
Thanks Angel!
Since i am only a beginner.I still studying how Jmol works for my need.
I try to search the Jmol script by Google.But only script that use in
Webpage.
Is it the same for writing a .exe program?
Thanks very much
If you want to start
On 04/30/2012 11:43 AM, eric henon wrote:
Hi all,
I need to define scripts spt
that could be called with different
parameters depending on when it is called
in my jmol application. These parameters
are Jmol variables.
The problem is that, when defininga function,
etiher in my jmol
do you think, any
suggestions?
Aren't 4 and 5 already there?
4: 'rockets'
5: 'cartoon' with 'set ribbonborder on'
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
different. But, yes, I could add
that there.
For me the point here is not that the user knows what he is using but
that scripts can know it and adapt accordingly.
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745
command from within Jmol but this might
require additional knowledge about the specific page (e.g. appletName)
or Javascript might not be available because the application is running.
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI
On 09/01/2013 11:47 AM, Rolf Huehne wrote:
Besides this I would propose some tweaks for the CSS of the
documentation. I have only checked them yet in Firefox 22.0 on Windows.
The attached picture shows how the tables are supposed to look with the
tweaks.
There were also some unexpected places
there is a link to a ZIP file from 2013/09/09:
http://chemapps.stolaf.edu/jmol/zip/Jmol.zip
The ZIP file also contains a 'jsmol.zip' file from the same date.
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena
1, 2013 at 4:47 AM, Rolf Huehne rhue...@fli-leibniz.de wrote:
Hi Bob and others,
the scripting documentation in the SVN hasn't been updated for quite a
while. This leads to a very outdated Jena3D mirror (
http://jena3d.fli-leibniz.de/**doc/jmol_scripting.htmlhttp://jena3d.fli
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
Fax: +49 3641 65 6210
E-Mail: rhue...@fli-leibniz.de
Website: http://www.fli-leibniz.de
Scientific Director: Prof. Dr. K
adequate?
It sounds ok. Should the same also apply to file writing?
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
Fax: +49 3641 65 6210
E-Mail: rhue...@fli-leibniz.de
. But it might be a little disturbing for others looking
for a stable version.
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
Fax: +49 3641 65 6210
E-Mail: rhue...@fli
the 'Jena3D Viewer' to Jmol 14.0 soon it would be
nice if our documentation mirror would provide the corresponding
documentation.
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65
lastupdate='Sep 26, 2013'
jmolversion='Jmol Version 13.2'
-
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
Fax: +49 3641 65 6210
E-Mail
Hi developers,
the version numbers displayed in Jmol 14.0.1 differ between Jmol and JSmol:
Java = 14.0.1_2013.12.04 (signed)
HTML5 = 13.3.9_dev_2013.11.27d2 (HTML5)
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI
On 12/10/2013 01:47 PM, Rolf Huehne wrote:
Hi developers,
the version numbers displayed in Jmol 14.0.1 differ between Jmol and JSmol:
Java = 14.0.1_2013.12.04 (signed)
HTML5 = 13.3.9_dev_2013.11.27d2 (HTML5)
Sorry, ignore this. It was a misconfiguration within the 'Jena3D
of 13.4 and also as default
instead of 13.2?
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
Fax: +49 3641 65 6210
E-Mail: rhue...@fli-leibniz.de
Website: http
?
This will be very difficult for setting up a mirror.
Currently our mirror uses this URL:
https://svn.code.sf.net/p/jmol/code/trunk/Jmol-documentation/script_documentation
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
if you want to make your page almost unusable for
some people just to make loading a little bit faster for people who
don't have your Jmol applet in their cache.
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745
extra parameters or maybe by enabling to
define a custom 'minimize' function?
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
Fax: +49 3641 65 6210
E-Mail: rhue...@fli
On 10/06/2014 02:22 PM, Robert Hanson wrote:
On Mon, Oct 6, 2014 at 6:32 AM, Rolf Huehne rhue...@fli-leibniz.de wrote:
Hi developers,
Q: I was wondering if it might be possible to achieve this by tuning the
'minimize' command with some extra parameters or maybe by enabling
spare me a lot
of development time.
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
Fax: +49 3641 65 6210
E-Mail: rhue...@fli-leibniz.de
Website: http://www.fli
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
Fax: +49 3641 65 6210
E-Mail: rhue...@fli-leibniz.de
Website: http://www.fli-leibniz.de
Scientific Director: Prof. Dr. K
was designed in 2005/2006 Jmol
math wasn't available yet. And I must admit that I havn't looked in
detail how self-defined atom set containing variables might be more
helpful in this context.
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
Fax: +49 3641 65 6210
E-Mail: rhue...@fli-leibniz.de
Website: http://www.fli-leibniz.de
Scientific Director: Prof. Dr. K
for the bitset variable example.
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
Fax: +49 3641 65 6210
E-Mail: rhue...@fli-leibniz.de
Website: http://www.fli-leibniz.de
structures or enhance for example the modelkit
functionality or the application functionality in general.
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
Fax: +49 3641 65
making everything to JSmol, logically also
including the application?
To avoid confusions I just have adapted to that and started to think of
Jmol as JSmol in general.
On Wed, Dec 3, 2014 at 6:48 AM, Rolf Huehne rhue...@fli-leibniz.de wrote:
Hi developers,
I would like to know
On 12/03/2014 05:00 PM, Robert Hanson wrote:
On Wed, Dec 3, 2014 at 9:19 AM, Rolf Huehne rhue...@fli-leibniz.de wrote:
Could the Java console also be opened like in the application?
The Jmol applet console opens in a separate frame in front of the applet.
Do you mean the 'Jmol console
consider this a
serious bug.
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
Fax: +49 3641 65 6210
E-Mail: rhue...@fli-leibniz.de
Website: http://www.fli-leibniz.de
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
Fax: +49 3641 65 6210
E-Mail: rhue...@fli-leibniz.de
Website: http://www.fli-leibniz.de
Scientific Director: Prof. Dr. K
Am 25.01.15 00:13, schrieb Derek Ng:
Hi,
I would like to create a web application that will allow the user to use a
‘selection box’ mechanism to select residues in the JSmol viewer, but am not
sure how to implement this. Would this even be possible? Any help or
suggestions is definitely
-x86_64)
OpenJDK 64-Bit Server VM (build 24.45-b08, mixed mode)
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
Fax: +49 3641 65 6210
E-Mail: rhue...@fli-leibniz.de
On 03/10/2015 07:13 PM, Rolf Huehne wrote:
On 03/10/2015 06:51 PM, Robert Hanson wrote:
I think you misunderstood, Rolf.
Right now
print
by itself throws an error.
I am proposing making that command -- by itself -- clear both the Jmol
console and the System.out JavaScript console (what
the output start again after several thousand lines of
output.
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
Fax: +49 3641 65 6210
E-Mail: rhue...@fli-leibniz.de
the slowdown can also be seen in
all these versions. Since the 'now' function was introduced in 14.2 I
can't provide exact timing information for the older versions.
In all of them the display follows the bottom of the output.
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research
and the corresponding output.
Clearing the console window should only be done manually!
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
Fax: +49 3641 65 6210
E-Mail: rhue...@fli
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