Re: [Matplotlib-users] Basemap contourf question

2010-07-14 Thread Eric Firing
On 07/14/2010 12:52 PM, Steve McFarlin wrote: Hello, I am trying to create a color map that maps 18 colors across 50 levels. As an example let say I have three colors [r,g,b] and want everything between 1 an 2 to be r, 3 through 10 to be g, and 11 through 50 to be b. From what I can tell it

Re: [Matplotlib-users] imshow memory leak in pylab mode?

2010-07-16 Thread Eric Firing
On 07/16/2010 01:32 AM, K.-Michael Aye wrote: On 2010-07-14 19:11:58 +0200, K.-Michael Aye said: On 2010-07-14 18:51:26 +0200, K.-Michael Aye said: On 2010-07-14 18:45:35 +0200, John Hunter said: On Wed, Jul 14, 2010 at 11:38 AM, K.-Michael Aye kmichael@gmail.com wrote: Out[12]: 1

[Matplotlib-users] fltkagg: anyone using it?

2010-07-16 Thread Eric Firing
I am always looking for ways to make mpl maintenance easier, and one way is to delete unused code. In that spirit, I am wondering: Is anyone out there actually using the fltkagg backend? Thanks. Eric -- This SF.net

Re: [Matplotlib-users] imshow memory leak in pylab mode?

2010-07-20 Thread Eric Firing
On 07/19/2010 11:59 PM, K.-Michael Aye wrote: On 2010-07-16 18:48:48 +0200, Eric Firing said: Furthermore, deleting images from ax.images does not free memory : Maybe because ipython is keeping a reference to every AxesImage object that you make... Eric Well, maybe, but why does

Re: [Matplotlib-users] Potential Bug with SpanSelector

2010-07-21 Thread Eric Firing
On 07/21/2010 09:11 AM, Aman Thakral wrote: Ok, so I've fixed it. Its just because the mouse goes outside the axes. How do I make the change in the code? Error: line 924 in widgets.py old code: x,y = event.xdata, event.ydata fixed code: if not event.xdata is None: x = event.xdata

Re: [Matplotlib-users] how to save pseudo-colorized images as 8-bit PNG files

2010-07-22 Thread Eric Firing
On 07/22/2010 03:40 PM, j vickroy wrote: Christopher Barker wrote: Jim Vickroy wrote: The attachment is a simple script that creates a 2D array of unsigned, 8-bit integers and uses matplotlib to save it as a PNG file. Unfortunately, the PNG file is much larger than expected -- apparently

Re: [Matplotlib-users] how to save pseudo-colorized images as 8-bit PNG files

2010-07-22 Thread Eric Firing
You can post-process the image with something like ImageMagick. Another alternative is to use PIL -- you can grab the matplotlib buffer, make a PIL image out of it, and use PIL to convert to an 8-bit palleted image. For that matter, you could probably bypass MPL, and use numpy to create

Re: [Matplotlib-users] Bypass keyboard navigation

2010-07-26 Thread Eric Firing
On 07/26/2010 10:18 AM, Benjamin Root wrote: On Mon, Jul 26, 2010 at 3:09 PM, David Mashburn david.n.mashb...@gmail.com mailto:david.n.mashb...@gmail.com wrote: Hello! My name is David Mashburn, and I have been a very happy user of matplotlib for almost 5 years now, so let me

Re: [Matplotlib-users] Contour plots with same color mapping

2010-07-26 Thread Eric Firing
On 07/26/2010 10:13 AM, Nikolaus Rath wrote: Hello, I would like to draw a couple of contour plots. The plots are on separate figures, but they should all have exactly the same color mapping (i.e, the same Z value should correspond to the same color in all plots). What's the best way to

Re: [Matplotlib-users] Bypass keyboard navigation

2010-07-26 Thread Eric Firing
On 07/26/2010 12:17 PM, David Mashburn wrote: Ben and Eric, Thanks so much for your help! I'm trying to turn change some of the rcParams in my script... Here is a test of what happens: import matplotlib matplotlib.rcParams['keymap.fullscreen']='' Traceback (most recent call last):

Re: [Matplotlib-users] PolyCollection API

2010-07-27 Thread Eric Firing
On 07/27/2010 08:14 AM, Mathew Yeates wrote: I installed matplotlib 1.0 and now I get a different error s=[0,0,8,8] ys=[0,8,8,0] verts=zip(xs,ys) poly = PolyCollection(verts) fails at line 587 in collections because xy = array([0, 0]) # xy.shape = (2,) and line 587 says xy =

Re: [Matplotlib-users] PolyCollection API

2010-07-27 Thread Eric Firing
On 07/27/2010 08:55 AM, Mathew Yeates wrote: I still get the error ValueError: arrays must have same number of dimensions at line 587 in collections.py I think you are not actually doing what you think you are doing, and what was explained by Tony. Try the attached script. Eric This is

Re: [Matplotlib-users] PolyCollection API

2010-07-27 Thread Eric Firing
On 07/27/2010 09:43 AM, Mathew Yeates wrote: I tried xs=[0,0,8,8] ys=[0,8,8,0] verts=zip(xs,ys) poly = PolyCollection([verts]) already but it doesn't work Yes, I saw you say that, but---did you actually try running the script I attached? Please run it from the command line (python

Re: [Matplotlib-users] contour's polygons

2010-07-28 Thread Eric Firing
On 07/27/2010 02:31 PM, Phil Rosenfield wrote: Hi, I'm 6 months into learning python and haven't been able to find a way to do this, so I hope you don't mind a basic question. I'd like to use the polygons contour makes but I can't figure out how to get them from ContourSet. Any examples or

Re: [Matplotlib-users] Documentation error/bug?

2010-07-28 Thread Eric Firing
On 07/28/2010 05:48 AM, Benjamin Root wrote: On Tue, Jul 27, 2010 at 1:31 PM, Friedrich Romstedt friedrichromst...@gmail.com mailto:friedrichromst...@gmail.com wrote: 2010/7/26 Benjamin Root ben.r...@ou.edu mailto:ben.r...@ou.edu: After some reading of sphinx documentation, it

Re: [Matplotlib-users] Data margin/buffer in matplotlib (Date formatted axis)

2010-07-30 Thread Eric Firing
On 07/29/2010 05:52 AM, bobnojio wrote: I am trying to figure out how to set 'buffers' or something of the sort on my matplotlib plots, so that my first and last data points are not centered exactly on the left and right border of the axis. my Y axis does this just fine (integer data), but my

Re: [Matplotlib-users] contour3D custom levels possible?

2010-08-01 Thread Eric Firing
On 08/01/2010 04:55 AM, Tom Arens wrote: Hello everyone, does anybody know why the contour3D function has a fixed set of levels? contour3D(X, Y, Z, levels=10, **kwargs) I want to plot only one line for one level. With contourf it works: from mpl_toolkits.mplot3d import axes3d import

Re: [Matplotlib-users] contour3D custom levels possible?

2010-08-01 Thread Eric Firing
On 08/01/2010 07:35 AM, Benjamin Root wrote: On Sun, Aug 1, 2010 at 9:55 AM, Tom Arens tak...@gmx.de mailto:tak...@gmx.de wrote: Hello everyone, does anybody know why the contour3D function has a fixed set of levels? contour3D(X, Y, Z, levels=10, **kwargs) I want to plot

Re: [Matplotlib-users] Tick label sizes

2010-08-04 Thread Eric Firing
On 08/04/2010 06:19 AM, John Hunter wrote: On Wed, Aug 4, 2010 at 11:07 AM, Tommy Gravtg...@mac.com wrote: A rather simple question, but I could not find the answer while rummaging around on the matplotlib webpages. Is there a way to increase the size of the tick label sizes from say

Re: [Matplotlib-users] Confused/frustrated w/ waitforbuttonpress

2010-08-07 Thread Eric Firing
On 08/05/2010 10:54 PM, Jorge Scandaliaris wrote: Hi, Looking for a way to analyze a set of images I found waitforbuttonpress, which basically does what I need: allows me to display a few plots/scatter/etc for as long as I need; then when pressing a key move to the next image and redo all

Re: [Matplotlib-users] Confused/frustrated w/ waitforbuttonpress

2010-08-07 Thread Eric Firing
On 08/07/2010 11:44 AM, Jorge Scandaliaris wrote: Eric Firingefir...@... writes: Running mpl from svn, with gtkagg backend, on ubuntu, but with ipython 0.11alpha1, I can't reproduce the problem; your example works for me. I suspect the difference is that ipython 0.11 uses a non-threaded

Re: [Matplotlib-users] Fatal Python Error with 64 bit versions

2010-08-10 Thread Eric Firing
On 08/10/2010 09:10 AM, Christoph Gohlke wrote: On 8/10/2010 11:53 AM, stetrick wrote: Should probably indicate that it is the MKV versions stetrick wrote: Christoph Gohlke wrote: On 8/9/2010 3:09 PM, stetrick wrote: I am now getting a message that says: Fatal Python error:

Re: [Matplotlib-users] show() blocks script execution for TkAgg from ipython -pylab

2010-08-11 Thread Eric Firing
On 08/10/2010 05:43 PM, Ryan Krauss wrote: I just upgraded my windows machine to matplotlib 1.0.0 and a simple script such as from pylab import * from scipy import * t = arange(0,1,0.01) y = sin(2*pi*t) figure(1) clf() plot(t,y) show() Now halts execution when run from the ipython

Re: [Matplotlib-users] Disable Colorbar Scaling In Contour Plot

2010-08-11 Thread Eric Firing
On 08/11/2010 08:54 AM, Friedrich Romstedt wrote: 2010/8/11 tgabrieltravisgabri...@gmail.com: I would like to have the colorbar displaying the same color scaling regardless of the data input. This /should/ be feasible with .contourf(.., vmin=VMIN, vmax=VMAX), but from the doc this isn't

Re: [Matplotlib-users] Issue with hist plotting

2010-08-14 Thread Eric Firing
On 08/14/2010 04:47 AM, Daπid wrote: Hello. I have had an issue trying to plot an histogram with Matplotlib. The line is: plt.hist([SNIa.angles, SNIbc.angles, SNII.angles], 11, range=[-pi, pi], normed=True,histtype='stepfilled',color=['g', 'r', 'b'],alpha=[1, 0.6, 1]) The problem

Re: [Matplotlib-users] 1.1.0 changes: bug in YAxis.set_ticks_position; new show() behavior

2010-08-16 Thread Eric Firing
On 08/16/2010 06:44 AM, Toby Burnett wrote: It is good to know that both issues have been recognized and addressed. I searched the bug list and I guess failed to use the right keyword, or just didn’t recognize the title. However, I am not in need of help, and certainly would not do a complete

Re: [Matplotlib-users] grid lines at specific coordinates

2010-08-19 Thread Eric Firing
On 08/19/2010 01:20 PM, Benjamin Root wrote: On Thu, Aug 19, 2010 at 5:05 PM, Bala subramanian bala.biophys...@gmail.com mailto:bala.biophys...@gmail.com wrote: Friends, I would like to place grid lines (precisely draw lines) at specific (x,y) coordinates. If i am not wrong,

Re: [Matplotlib-users] MPL = Location of new figure on desktop

2010-08-20 Thread Eric Firing
On 08/20/2010 05:24 AM, Benjamin Root wrote: On Fri, Aug 20, 2010 at 10:12 AM, Ryan May rma...@gmail.com mailto:rma...@gmail.com wrote: On Fri, Aug 20, 2010 at 9:41 AM, Benjamin Root ben.r...@ou.edu mailto:ben.r...@ou.edu wrote: One possibility for this behavior might be that

Re: [Matplotlib-users] how do label with matshow

2010-08-20 Thread Eric Firing
On 08/20/2010 12:38 AM, Patricia wrote: Hi all, I start using matplotlib a month ago, so I'm still learning. I'm trying to do a heatmap with matshow. My code is the following: data = numpy.array(a).reshape(4, 4) cax = ax.matshow(data, interpolation='nearest', cmap=cm.get_cmap('PuBu'),

Re: [Matplotlib-users] Colorbar labeling

2010-08-20 Thread Eric Firing
On 08/20/2010 05:29 AM, Bruce Ford wrote: I have a grid with values ranging from exactly 0.0 and 100.0. When I plot this with colorbar, the base of the colorbar is labeled -0.0. Is this a default for 0.0...to plot it with as a negative number? Any workarounds? Would you provide a minimal

Re: [Matplotlib-users] Colorbar labeling

2010-08-20 Thread Eric Firing
On 08/20/2010 10:14 AM, Bruce Ford wrote: This effect is happening within an web app that displays gridded fields from multiple datasets (~4500 lines of code). So I it's tricky to create an example. Although if I use numpy.min(grid) the minimum is 0. So, I think colorbar or matplotlib is

Re: [Matplotlib-users] Colorbar labeling

2010-08-20 Thread Eric Firing
On 08/20/2010 10:51 AM, Bruce Ford wrote: Thanks I'll give this a try. numpy.min(grid) reports 0.0 (no negative) yet it labels as -0.0, BTW, but let me give this a try. Bruce, What matters is not min(grid), but the value of the tick. Unless you are forcing them to be the same via a kwarg

Re: [Matplotlib-users] Setting y-tick locations on an image plot changes y-axis limits, Bug or expected behavior?

2010-08-21 Thread Eric Firing
On 08/20/2010 12:18 PM, Joe Kington wrote: Hi, I've recently noticed that setting the y-tick locations on an image plot changes the y-axis limits, while changing the x-tick locations does not change the x-axis limits. I wouldn't have expected either to change the axis limits, but it seems

Re: [Matplotlib-users] Setting y-tick locations on an image plot changes y-axis limits, Bug or expected behavior?

2010-08-21 Thread Eric Firing
On 08/20/2010 12:18 PM, Joe Kington wrote: Hi, I've recently noticed that setting the y-tick locations on an image plot changes the y-axis limits, while changing the x-tick locations does not change the x-axis limits. I wouldn't have expected either to change the axis limits, but it seems

Re: [Matplotlib-users] Issue with hist plotting

2010-08-22 Thread Eric Firing
On 08/22/2010 04:51 AM, Daπid wrote: On Sat, Aug 14, 2010 at 10:19 PM, Eric Firingefir...@hawaii.edu wrote: The problem is that the alpha kwarg can never be other than a scalar in mpl at present, as far as I know. The error message from to_rgba was intended to be informative, but in this

Re: [Matplotlib-users] CMYK images

2010-08-26 Thread Eric Firing
On 08/26/2010 05:49 AM, Benjamin Root wrote: On Thu, Aug 26, 2010 at 9:39 AM, Daπid davidmen...@gmail.com mailto:davidmen...@gmail.com wrote: Image Magick and Inkscape seem to work for this. Probably the first one is easier to automatize in batch processing. Quick warning about

Re: [Matplotlib-users] Not scaling patches.

2010-08-27 Thread Eric Firing
On 08/27/2010 07:15 AM, Ryan May wrote: On Thu, Aug 26, 2010 at 2:24 PM, Ben Edwardsbedwa...@cs.unm.edu wrote: Hello, I've used matplotlib for a while but never had cause to ask a question until now. I am trying to add a patch to an axis, but would like the patch to remain the same size when,

Re: [Matplotlib-users] realtime plotting was working with matplotlib 0.99.1.1 and it doesn't with matplotlib 1.0.0

2010-08-27 Thread Eric Firing
On 08/27/2010 05:43 PM, Benjamin Root wrote: On Fri, Aug 27, 2010 at 10:17 PM, Chiara Caronna chiaracaro...@hotmail.com mailto:chiaracaro...@hotmail.com wrote: Ok, it is a backend issue: I checked and I was using Qt4Agg as soon as I changed to TkAgg the script worked fine...

Re: [Matplotlib-users] realtime plotting was working with matplotlib 0.99.1.1 and it doesn't with matplotlib 1.0.0

2010-08-28 Thread Eric Firing
On 08/27/2010 05:17 PM, Chiara Caronna wrote: Ok, it is a backend issue: I checked and I was using Qt4Agg as soon as I changed to TkAgg the script worked fine... still is this normal or is it a bug? thanks for your suggestion and help! Chiara, As a workaround for Qt4Agg, you can follow

Re: [Matplotlib-users] problems with autoscale_view

2010-08-29 Thread Eric Firing
On 08/28/2010 06:40 PM, xyz wrote: Hello, If I use autoscale_view than: * plt.text appears outside x and y coordinates * and the coordinates starts do not from 0 whereas I use ax.set_xlim(0) and ax.set_ylim(0) What did I wrong? The call to autoscale_view overrides the earlier calls to

Re: [Matplotlib-users] How to get all data points plotted/displayed in a line plot

2010-09-02 Thread Eric Firing
Mike, Using svn trunk, I see exactly the problem Jens is talking about. Maybe there is still a bug in the path simplification? If I try to plot after turning simplification off, I don't get any image at all, so I can't immediately say whether the problem is in the simplification. To

Re: [Matplotlib-users] DreamPie (a new Python shell) and matplotlib

2010-09-03 Thread Eric Firing
On 09/02/2010 07:47 PM, Noam Yorav-Raphael wrote: Hello, I'm the developer of DreamPie, a new graphical Python shell (you can check it out at http://dreampie.sourceforge.net ) I worked to make it work nicely with matplotlib -- it runs Tk/GTK/Qt event loops when idle, so if matplotlib is in

Re: [Matplotlib-users] draw after set_data

2010-09-08 Thread Eric Firing
On 09/07/2010 07:33 PM, Philippe Crave wrote: hi, sorry to bring this up again. style haven't found how to draw my plot faster than self.fig.canvas.draw(), after a set_data() If you need to change the scale of the plot when you update the data, then I don't see any alternative to redoing

Re: [Matplotlib-users] Multiple tick labels

2010-09-10 Thread Eric Firing
On 09/10/2010 10:54 AM, Brian Larsen wrote: Hello all, I feel like this is possible but I am having trouble figuring it out. I want to put extra labels on the ticks on the xaxis like in the upper panel of the figure http://sprg.ssl.berkeley.edu/fast/graphics/socfig1.gif Following

Re: [Matplotlib-users] weird behaviour in x axis

2010-09-13 Thread Eric Firing
On 09/11/2010 11:12 AM, freekk wrote: Im trying to do a very simple x vs y plot. Where the x values range between 3247 and 3256 and y between 0 and 1. This data is stored in data.dat. I plot it using the code below, the resulting plot is shown in the first of the two plots below.

Re: [Matplotlib-users] matplotlib on Ubuntu 10.04 (64-bit)

2010-09-13 Thread Eric Firing
On 09/13/2010 12:08 PM, Virgil Stokes wrote: On 2010-09-13 21:55, Benjamin Root wrote: On Mon, Sep 13, 2010 at 2:38 PM, Virgil Stokes v...@it.uu.se mailto:v...@it.uu.se wrote: I have tried to produce a very simple plot with my recent installation of matplotlib (1.0.0 64-bit) and

Re: [Matplotlib-users] matplotlib on Ubuntu 10.04 (64-bit)

2010-09-14 Thread Eric Firing
On 09/13/2010 04:46 PM, jules hummon wrote: Virgil The scheme illustrated below actually does work. Message: 5 Date: Mon, 13 Sep 2010 12:55:43 -1000 From: Eric Firingefir...@hawaii.edu Subject: Re: [Matplotlib-users] matplotlib on Ubuntu 10.04 (64-bit) To:

Re: [Matplotlib-users] matplotlib on Ubuntu 10.04 (64-bit)

2010-09-14 Thread Eric Firing
On 09/13/2010 12:55 PM, Eric Firing wrote: If you would like up-to-date versions of both numpy and matplotlib, then you can either find and install the *dev packages individually, or do something like this: sudo apt-get build-dep python-matplotlib sudo apt-get remove python No! I meant

Re: [Matplotlib-users] problem building matplotlib

2010-09-15 Thread Eric Firing
On 09/14/2010 01:36 PM, Dan Kortschak wrote: Hello, I just tried to have just tried to build matplotlib, but it fails - and is unable to find wxPython (looking under 2.8 rather than 2.6 where is lives - installed from source) or libgtk-2 headers (installed from apt repo). Can anyone

Re: [Matplotlib-users] problem building matplotlib

2010-09-15 Thread Eric Firing
On 09/15/2010 03:50 AM, Benjamin Root wrote: On Wed, Sep 15, 2010 at 5:34 AM, Dan Kortschak dan.kortsc...@adelaide.edu.au mailto:dan.kortsc...@adelaide.edu.au wrote: I've just has a look at that and unfortunately it does not fix the problem Is there any other suggestion that

Re: [Matplotlib-users] weird behaviour in x axis

2010-09-15 Thread Eric Firing
On 09/15/2010 04:55 AM, Benjamin Root wrote: On Tue, Sep 14, 2010 at 11:12 AM, Jan Skowron jan.skow...@gmail.com mailto:jan.skow...@gmail.com wrote: Hi, apropos this offset discussion. matplotlib makes offsets not aligned to the full tens or some other easy number with small

Re: [Matplotlib-users] weird behaviour in x axis

2010-09-15 Thread Eric Firing
On 09/15/2010 08:25 AM, Benjamin Root wrote: On Wed, Sep 15, 2010 at 12:37 PM, Eric Firing efir...@hawaii.edu mailto:efir...@hawaii.edu wrote: On 09/15/2010 04:55 AM, Benjamin Root wrote: On Tue, Sep 14, 2010 at 11:12 AM, Jan Skowron jan.skow...@gmail.com mailto:jan.skow

Re: [Matplotlib-users] problem building matplotlib

2010-09-15 Thread Eric Firing
On 09/15/2010 01:17 PM, Dan Kortschak wrote: That fixes the problem. thanks On Wed, 2010-09-15 at 07:30 -1000, Eric Firing wrote: Looking again at the original build output, and at setup.py and setupext.py, it appears that there is a bug in the latter. If the wrong version of wx is found

Re: [Matplotlib-users] another incorrectly clipped PNG in the gallery

2010-09-22 Thread Eric Firing
On 09/22/2010 10:11 AM, Russell Owen wrote: On Sep 22, 2010, at 11:16 AM, Benjamin Root wrote: On Wed, Sep 22, 2010 at 12:04 PM, Russell E. Owen ro...@uw.edu mailto:ro...@uw.edu wrote: In article 4c935c08.1000...@gmail.com mailto:4c935c08.1000...@gmail.com, Alan G Isaac

Re: [Matplotlib-users] autoscale when adding data to a Line2D?

2010-09-27 Thread Eric Firing
On 09/26/2010 09:43 PM, Fernando Perez wrote: Mmh, On Sun, Sep 26, 2010 at 10:56 PM, Jae-Joon Leelee.j.j...@gmail.com wrote: Did you try autoscale_view method? http://matplotlib.sourceforge.net/api/axes_api.html?highlight=autoscale#matplotlib.axes.Axes.autoscale_view Please post a sample

Re: [Matplotlib-users] errorbar plot requires hold=True

2010-10-03 Thread Eric Firing
On 09/30/2010 08:28 AM, Joey Richards wrote: When I use the errorbar() routine to plot data, unless I set hold=True as a kwarg (or set it globally), the data are plotted without the errorbars. I believe it is because the routine first plots the error bars, then overplots the data points

Re: [Matplotlib-users] Problem with show()

2010-10-05 Thread Eric Firing
On 10/05/2010 01:00 PM, Jorge Scandaliaris wrote: Hi, Today I tried to run some code in my new notebook, but I only got blank figures and high CPU usage as a result. This code did run on my previous laptop. I can reproduce this behavior with the following code at the bottom of this message.

Re: [Matplotlib-users] confused about behavior inside and outside ipython

2010-10-07 Thread Eric Firing
On 10/06/2010 06:18 PM, Collin Day wrote: I have googled around and looked through the documents, but I can't seem to find a description of the difference between running a script inside and outside ipython (using ipython --pylab). For example, I tried doing the following in a script and made

Re: [Matplotlib-users] Events not registering in FigureCanvasWxAgg

2010-10-07 Thread Eric Firing
On 10/07/2010 07:11 PM, Åke Kullenberg wrote: I am using Python 2.7 and Matplotlib 1.0.0 and I am having problems getting events triggering in this example below. I have taken the draggable rectangle example (with blit) code from the event handling documentation

Re: [Matplotlib-users] Ticks Size

2010-10-18 Thread Eric Firing
On 10/18/2010 09:42 AM, Gökhan Sever wrote: On Mon, Oct 18, 2010 at 12:46 PM, Ted Kordteddy.k...@gmail.com wrote: Hi How do I make the tick size bigger as in thicker/bolder? matplotlib.rc('ytick.major', size=5) makes it longer but 'not' thicker. Ted I[1]: plt.plot(range(100)) O[1]:

Re: [Matplotlib-users] weird range value in the colorbar, matplotlib

2010-10-20 Thread Eric Firing
On 10/19/2010 05:44 AM, vaishu wrote: Hey guys, I am a new user to the python matplotlib, this might be a simple question but I searched the internet for hours and couldn't find a solution for this. I am plotting precipitation data from which is in the NetCDF format. What I find weird is

Re: [Matplotlib-users] range in the colorbar

2010-10-21 Thread Eric Firing
On 10/20/2010 11:41 PM, Alexander Dietz wrote: Hi, I am generating a scatter plot with a colorbar, and want to pass on the colorbar to some function to do something with it, like plt.scatter(px, py, c=pz, ...) cb = plt.colorbar() foo(cb) My question: How can I extract the range of the

Re: [Matplotlib-users] reverse axis on colorbar, and showing under- and over-colors

2010-10-26 Thread Eric Firing
On 10/26/2010 04:50 AM, Maarten Sneep wrote: Hi, I did solve my own question. For posterity, and perhaps for a more elegant solution, I post my solution here. On Tue, 2010-10-26 at 10:56 +0200, Maarten Sneep wrote: I have an image with cloud pressures, 1000 at the surface, 200 at the top

Re: [Matplotlib-users] Trouble with contour plot

2010-10-29 Thread Eric Firing
I don't know if there are any strict requirement on monotonicity for X and Y, or if there are any cases where the plot is still valid even if that property is violated. If it is a requirement, then I agree that there should be a check. For sensible output, it is a requirement. Contour and

Re: [Matplotlib-users] show(), the state of the art

2010-11-02 Thread Eric Firing
On 11/02/2010 04:39 AM, Alan G Isaac wrote: On 11/2/2010 10:06 AM, Benjamin Root wrote: I have personally seen significant progress in this area, but there are a few backends that aren't quite right (MacOSX backend, I believe?). I believe multiple uses of ``show`` fail and are expected to

Re: [Matplotlib-users] Ticks direction

2010-11-02 Thread Eric Firing
On 11/02/2010 03:18 PM, Jae-Joon Lee wrote: A quick (and not safe) way w/ mpl v1.0 is, ax = plt.subplot(111) ax.plot(np.arange(3)) ax.set_xticks([0, 0.5, 1., 1.5, 2.]) mytick = ax.xaxis.majorTicks[2] mytick._apply_params(tickdir=out) I don't think there is a way

Re: [Matplotlib-users] Unsightly white space in contour plots

2010-11-03 Thread Eric Firing
On 11/03/2010 09:01 AM, jgamble wrote: Hi all, I'm trying to visualize some data using countourf in pyplot, and I am having a bit of trouble. For some reason, the y axis does not scale properly, and an ugly white bar appears where there are no pixels to plot (see screenshot). Ideally, I

Re: [Matplotlib-users] Mac OSX backend

2010-11-13 Thread Eric Firing
On 11/13/2010 06:16 AM, Michiel de Hoon wrote: --- On Sat, 11/13/10, John Hunterjdh2...@gmail.com wrote: Ie if we have a script like # some plotting commands ... # some expensive non GUI computation ... # some update to plot above ... Would we not run the risk that

Re: [Matplotlib-users] Weird white stripes when using matplotlib.pyplot countourf

2010-11-17 Thread Eric Firing
On 11/17/2010 07:35 AM, Ognjen Ilic wrote: Hello all, I posted about this problem on another forum (with an image attachment) http://python-forum.org/pythonforum/viewtopic.php?f=18t=21951p=99290#p99290 In the figure below white space that forms a trapezoid to the right (slope then constant)

Re: [Matplotlib-users] Weird white stripes when using matplotlib.pyplot countourf

2010-11-17 Thread Eric Firing
On 11/17/2010 01:28 PM, Ognjen Ilic wrote: Thanks for the help. However, when I change the matplotlibrc file I get the following message Bad key path.simplify on line 267 in /HOME/.matplotlib/matplotlibrc. You probably need to get an updated matplotlibrc file from

Re: [Matplotlib-users] controlling the aspect of contour/contourf

2010-11-20 Thread Eric Firing
On 11/20/2010 09:05 PM, Garry Willgoose wrote: I want to control the ratio of the size of the x and y axes of contour/ contourf() plot (in the same way that 'aspect' lets me control imgshow()). Is there any way to do this? Yes, use the set_aspect() method of the Axes object:

Re: [Matplotlib-users] Axis line width and label problem

2010-11-21 Thread Eric Firing
On 11/21/2010 11:21 AM, Tommy Grav wrote: I have two questions: 1. Is there a way to increase the line width of the axes? I have figured out how to do it with the tick marks, but not the axes themselves. for s in ax.spines.values(): s.set_linewidth(5) 2. When adding a label to

Re: [Matplotlib-users] Possible memory leak?

2010-11-22 Thread Eric Firing
On 11/22/2010 06:15 AM, Benjamin Root wrote: On Fri, Nov 19, 2010 at 3:14 PM, Caleb Constantine cadamant...@gmail.com mailto:cadamant...@gmail.com wrote: On Thu, Nov 18, 2010 at 4:50 PM, Benjamin Root ben.r...@ou.edu mailto:ben.r...@ou.edu wrote: Caleb,

Re: [Matplotlib-users] caveats found installing matplotlib from svn source on python 2.7 in mac os x Leopard

2011-01-03 Thread Eric Firing
On 01/02/2011 05:40 PM, Tom K. wrote: [...] FOURIER DEMO - PROBLEM AND FIX IN lines.py Next I tried my wx-based gui http://wiki.wxpython.org/MatplotlibFourierDemo. It raised assertions in lines.py, particularly the part where it tries to access path, affine =

Re: [Matplotlib-users] stripes in the colorbar

2011-01-12 Thread Eric Firing
On 01/12/2011 06:58 AM, Benjamin Root wrote: On Wed, Jan 12, 2011 at 2:28 AM, Daniel Mader danielstefanma...@googlemail.com mailto:danielstefanma...@googlemail.com wrote: Hi, the same happens with regular colorbars, too. Me, too, I didn't always have this issue but I can't tell

Re: [Matplotlib-users] Fwd: malloc error on show() oder x/ylabel()

2011-01-12 Thread Eric Firing
On 01/12/2011 07:11 AM, Hannes Kutza wrote: Because of import- and compatibility issues I build everything from scetch some days ago. Now i only have one Python (2.7.1) installation and only one matplotlib version (1.0.1). In the

Re: [Matplotlib-users] colorbar with Axes3D for a set of collections?

2011-01-13 Thread Eric Firing
On 01/13/2011 01:40 PM, Daniel Mader wrote: Hi, I am trying to plot a set of simulation results of FEM simulations. With a lot of help from Ben I can plot the deformed shape quite nicely but I have trouble in applying a colorbar to the plot. In the attached file there are three results with

Re: [Matplotlib-users] colorbar with Axes3D for a set of collections?

2011-01-14 Thread Eric Firing
On 01/14/2011 02:02 AM, Daniel Mader wrote: Hi Eric, thanks for your feedback, it helped a lot! I have some questions left, see below. 2011/1/14 Eric Firingefir...@hawaii.edu: Quick thoughts with no testing or concrete examples: 1) Don't set the cmap or norm for the colorbar; let it inherit

Re: [Matplotlib-users] script for redoing a large number of plots?

2011-01-15 Thread Eric Firing
On 01/15/2011 09:35 AM, Daniel Mader wrote: Hi, for my thesis I have a large number of plots generated by--again--a laaarge number of Python scripts. Now I need a moderate font size for all of them for the thesis while for a presentation and poster it needs to be much bigger. In

Re: [Matplotlib-users] ColorbarBase usage

2011-01-17 Thread Eric Firing
On 01/17/2011 05:42 AM, Bala subramanian wrote: Friends, I have created a figure (with two rows and two columns) and i drew four contourf plots (A,B,C,D etc). All the four contourf has the same coloring and bounds. I do not want to draw a colorbar() for each of the plots separately but only

Re: [Matplotlib-users] Contour/Contourf dynamically with slider

2011-01-18 Thread Eric Firing
On 01/17/2011 10:24 PM, sprobst wrote: Hi all, I want to make a contout plot with a slider element. But I am not sure if it is possible at all and if it is possible how. With contouring, you have to simply remake the ContourSet (that is, re-run contour) with any change to the data being

Re: [Matplotlib-users] a break in the y-axis

2011-01-22 Thread Eric Firing
On 01/22/2011 05:16 PM, Paul Ivanov wrote: Paul Ivanov, on 2011-01-22 18:28, wrote: Ilya Shlyakhter, on 2011-01-22 19:06, wrote: Is it possible to create a break in the y-axis so that it has ticks for value 0-.2, then ticks for values .8-1.0, but devotes only a token amount of space to the

Re: [Matplotlib-users] a break in the y-axis

2011-01-24 Thread Eric Firing
On 01/23/2011 11:46 PM, Paul Ivanov wrote: [...] Done in r8935, see examples/pylab_examples/broken_axis.py Thank you. I documented the above, used deterministic fake data, as Eric suggested, and added the diagonal cut lines that usually accompany a broken axis. Here's the tail end of the

Re: [Matplotlib-users] Defining a precise x-axis max in plot()

2011-01-24 Thread Eric Firing
On 01/24/2011 02:49 PM, Lionel (Lee) Brooks 3rd wrote: Hello Gentlepeople, I am plotting an integer array using: matplotlib.pyplot.plot(). For my purposes it is imperative that the x-axis be explicitly defined. I have tried to achieve this by using: matplotlib.pyplot.axis(v). Where v is a

Re: [Matplotlib-users] colorbar+log+latex

2011-01-25 Thread Eric Firing
On 01/25/2011 06:58 PM, Shrividya Ravi wrote: [...] On the same topic of the colorbar, how can I readjust the colors such that it only goes between user-specified values? For example, I have one imshow plot where the values range between 0 and 350. However, I only want to look at the values

Re: [Matplotlib-users] colorbar+log+latex

2011-01-25 Thread Eric Firing
On 01/25/2011 08:51 PM, Paul Ivanov wrote: Eric Firing, on 2011-01-25 19:52, wrote: On 01/25/2011 06:58 PM, Shrividya Ravi wrote: [...] On the same topic of the colorbar, how can I readjust the colors such that it only goes between user-specified values? For example, I have one imshow plot

Re: [Matplotlib-users] pyplot: Extract contourset without plotting

2011-01-27 Thread Eric Firing
On 01/27/2011 09:21 AM, Daniel Fulger wrote: Dear all, contourset = pyplot.contour(..) calculates the contourset but also grabs whatever figure is currently active *somewhere* in the entire code and whichever scope it was created. The contours are plotted into it. While I could possibly

Re: [Matplotlib-users] Custom colormap is inconsistent. What is wrong?

2011-02-01 Thread Eric Firing
On 02/01/2011 02:18 PM, Benjamin Root wrote: On Tue, Feb 1, 2011 at 6:05 PM, Jeremy Conlin jlcon...@gmail.com mailto:jlcon...@gmail.com wrote: On Tue, Feb 1, 2011 at 5:00 PM, Benjamin Root ben.r...@ou.edu mailto:ben.r...@ou.edu wrote: On Tue, Feb 1, 2011 at 5:48

Re: [Matplotlib-users] Trouble with imshow

2011-02-02 Thread Eric Firing
On 02/02/2011 03:08 PM, Robert Abiad wrote: On 2/2/2011 3:59 PM, Christoph Gohlke wrote: On 2/2/2011 3:33 PM, Robert Abiad wrote: Hello All, I'm very new to python, so bear with me. I'd like to use python to do my image processing, but I'm running into behavior that doesn't make sense to

Re: [Matplotlib-users] Trouble with imshow

2011-02-03 Thread Eric Firing
On 02/02/2011 08:38 PM, Robert Abiad wrote: [...] I'll put it in as an enhancement, but I'm still unsure if there is a bug in there as well. Is there something I should be doing to clear memory after the first figure is closed other than close()? I don't understand why memory usage grows

Re: [Matplotlib-users] Trouble with imshow

2011-02-03 Thread Eric Firing
On 02/02/2011 10:17 PM, Eric Firing wrote: On 02/02/2011 08:38 PM, Robert Abiad wrote: [...] I'll put it in as an enhancement, but I'm still unsure if there is a bug in there as well. Is there something I should be doing to clear memory after the first figure is closed other than close

Re: [Matplotlib-users] Trouble with imshow

2011-02-03 Thread Eric Firing
On 02/03/2011 11:30 AM, Robert Abiad wrote: On 2/3/2011 10:06 AM, Eric Firing wrote: On 02/02/2011 10:17 PM, Eric Firing wrote: On 02/02/2011 08:38 PM, Robert Abiad wrote: [...] I'll put it in as an enhancement, but I'm still unsure if there is a bug in there as well. Is there something I

Re: [Matplotlib-users] Trouble with imshow

2011-02-03 Thread Eric Firing
On 02/03/2011 12:28 PM, Christoph Gohlke wrote: On 2/3/2011 2:15 PM, Eric Firing wrote: On 02/03/2011 11:30 AM, Robert Abiad wrote: On 2/3/2011 10:06 AM, Eric Firing wrote: On 02/02/2011 10:17 PM, Eric Firing wrote: On 02/02/2011 08:38 PM, Robert Abiad wrote: [...] I'll put

Re: [Matplotlib-users] Trouble with imshow

2011-02-03 Thread Eric Firing
On 02/03/2011 01:02 PM, Christoph Gohlke wrote: On 2/3/2011 2:44 PM, Eric Firing wrote: On 02/03/2011 12:28 PM, Christoph Gohlke wrote: On 2/3/2011 2:15 PM, Eric Firing wrote: On 02/03/2011 11:30 AM, Robert Abiad wrote: On 2/3/2011 10:06 AM, Eric Firing wrote: On 02/02/2011 10:17 PM

Re: [Matplotlib-users] Trouble with imshow

2011-02-03 Thread Eric Firing
On 02/03/2011 03:04 PM, Benjamin Root wrote: Also, not to sound too annoying, but has anyone considered the idea of using compressed arrays for holding those rgba values? I don't see how that really helps; as far as I know, a full rgba array has to be passed into agg. What *does* help is

Re: [Matplotlib-users] Trouble with imshow

2011-02-04 Thread Eric Firing
On 02/03/2011 05:35 PM, Christoph Gohlke wrote: On 2/3/2011 6:50 PM, Eric Firing wrote: On 02/03/2011 03:04 PM, Benjamin Root wrote: Also, not to sound too annoying, but has anyone considered the idea of using compressed arrays for holding those rgba values? I don't see how that really

Re: [Matplotlib-users] Trouble with imshow

2011-02-04 Thread Eric Firing
On 02/04/2011 10:28 AM, Christoph Gohlke wrote: On 2/4/2011 11:54 AM, Eric Firing wrote: On 02/03/2011 05:35 PM, Christoph Gohlke wrote: On 2/3/2011 6:50 PM, Eric Firing wrote: On 02/03/2011 03:04 PM, Benjamin Root wrote: Also, not to sound too annoying, but has anyone considered

Re: [Matplotlib-users] Trouble with imshow

2011-02-04 Thread Eric Firing
On 02/04/2011 11:33 AM, Eric Firing wrote: On 02/04/2011 10:28 AM, Christoph Gohlke wrote: On 2/4/2011 11:54 AM, Eric Firing wrote: On 02/03/2011 05:35 PM, Christoph Gohlke wrote: On 2/3/2011 6:50 PM, Eric Firing wrote: On 02/03/2011 03:04 PM, Benjamin Root wrote: Also, not to sound too

Re: [Matplotlib-users] Trouble with imshow

2011-02-04 Thread Eric Firing
On 02/04/2011 12:33 PM, Christoph Gohlke wrote: On 2/4/2011 2:14 PM, Eric Firing wrote: On 02/04/2011 11:33 AM, Eric Firing wrote: On 02/04/2011 10:28 AM, Christoph Gohlke wrote: On 2/4/2011 11:54 AM, Eric Firing wrote: On 02/03/2011 05:35 PM, Christoph Gohlke wrote: On 2/3/2011 6:50

Re: [Matplotlib-users] Trouble with imshow

2011-02-05 Thread Eric Firing
On 02/04/2011 02:03 PM, Christoph Gohlke wrote: [...] How about these changes to color.py (attached). This avoids copies, uses in-place operations, and calculates single precision when normalizing small integer and float32 arrays. Similar could be done for LogNorm. Do masked arrays support

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