verride of DoUpdatePreview() in the derived classes.
Hope that helps a bit.
Best Rafl
-
Date: Wed, 3 Mar 2021 17:14:17 +
From: "Nolden, Marco"
To: "Clarkson, Matt" ,
"mitk-users@lists.sourc
Hi Marco,
I hope you are well.
Thanks, I’ll brush up on my C++ skills and take a look.
M
From: "Nolden, Marco"
Date: Wednesday, 3 March 2021 at 17:14
To: "Clarkson, Matt" , "mitk-users@lists.sourceforge.net"
Subject: AW: Segmentation Algorithms
Hi Matt,
I think the source code is the best re
Hi Matt,
I think the source code is the best reference ;) I would assume it’s mostly ITK
based, e.g.
https://phabricator.mitk.org/source/mitk/browse/develop/Modules/Segmentation/Interactions/mitkWatershedTool.cpp$107
for the watershed.
Hope that helps.
Marco
Von: Clarkson, Matt
Gesendet: D
mages.
Von: Dinkelacker, Stefan
Gesendet: Dienstag, 1. Dezember 2020 12:54
An: lorenzo bennati; mitk-users@lists.sourceforge.net
Betreff: Re: [mitk-users] segmentation of mitral valve from sparse rotational
MRI images
Hi,
it is totally possible to load let's say 18 dynamic (time-re
Hi,
it is totally possible to load let's say 18 dynamic (time-resolved) 2d images
into MITK. As long as the images still contain their position and orientation
meta data they will be positioned accordingly in space and time by MITK.
You can then segment each image with the Segmentation or Mul
@lists.sourceforge.net
Betreff: Re: [mitk-users] Segmentation not working in latest nightly windows
build of MITK-DIFFUSION
Which OS?
Peter
Von: Amit Choudhari
Gesendet: Montag, 27. Juli 2020 20:21
An: Neher, Peter
Betreff: Re: Segmentation not working in latest nightly
Choudhari; mitk-users@lists.sourceforge.net
Betreff: Re: [mitk-users] Segmentation not working in latest nightly windows
build of MITK-DIFFUSION
Which OS?
Peter
Von: Amit Choudhari
Gesendet: Montag, 27. Juli 2020 20:21
An: Neher, Peter
Betreff: Re: Segmentation not
Which OS?
Peter
Von: Amit Choudhari
Gesendet: Montag, 27. Juli 2020 20:21
An: Neher, Peter
Betreff: Re: Segmentation not working in latest nightly windows build of
MITK-DIFFUSION
Thank you, Sir.
Please share link to older installer.
Best,
Amit.
Sure, I hope this will be resolved soon. In the meantime the workaround should
help. Otherwise I can also provide you with an older installer where the
segmentation on diffusion images still works.
Best,
Peter
Von: Amit Choudhari
Gesendet: Montag, 27. Juli 2
Dear Sir,
Will this issue be resolved in further updates/nightly builds?
Best,
Amit
From: Neher, Peter
Sent: Monday, July 27, 2020 11:38:57 PM
To: Amit Choudhari ;
mitk-users@lists.sourceforge.net
Subject: AW: Segmentation not working in latest nightly windows
Dear Amit,
as answered below, a workaround is to segment on a 3D image. For example use a
T1 or b0 image of your data. IVIM data = diffusion data = 4D data.
Best,
Peter
Von: Amit Choudhari
Gesendet: Montag, 27. Juli 2020 17:04
An: Neher, Peter; mitk-users@l
Dear Sir,
Encountered this while working with IVIM data.
Needed a 3d roi, so used segmentation tool.
Thank you.
Best Regards,
Amitkumar J. Choudhari,
Asst. Prof., Dept of Radiodiagnosis,
Tata Memorial Hospital.
From: Neher, Peter
Sent: Monday, 27 July, 2020,
Hi,
this issue is addressed in https://phabricator.mitk.org/T27602?.
Best regards,
Stefan
Von: Neher, Peter
Gesendet: Montag, 27. Juli 2020 15:59
An: Amit Choudhari; mitk-users@lists.sourceforge.net
Betreff: Re: [mitk-users] Segmentation not working in
Hi Amit,
thank you for reporting this. It is an issue apparently only affecting 4D
images such as diffusion images. If you only load a 3D image, the segmentation
should work.
Peter
Von: Amit Choudhari
Gesendet: Montag, 27. Juli 2020 15:01
An: mitk-users@lis
Hi Jaafar,
welcome to the MITK community. To crop an image you could use the Image Cropper
plugin for example. It is the kind of box-shaped icon in the General toolbar.
You also have the option to roughly pre-segment your structure of interest and
right-click on your segmentation in the Data Ma
Hi Stefan,
Ouch, I now have second thoughts on fixing this! No, seriously, I'll try
it anyway but I do start with a less-than-positive attitude ;) I'm not
sure it's the same bug though. The visual is different. I can reinit
then rotate the axis as much as I want and it's ok. If I do a Global
Hi,
this may also have something to do with [1]? Make sure to click on "Show older
changes" to see all the comments and example images/animations.
Best,
Stefan
[1] https://phabricator.mitk.org/T18776
Von: Nil Goyette
Gesendet: Dienstag, 20. Juni 2017 20
Datum: Tuesday 23 February 2016 10:11
An: Andreas Fetzer
mailto:a.fet...@dkfz-heidelberg.de>>
Betreff: Re: [mitk-users] Segmentation
Hi Andreas,
I have built MITK Workbench from master, as you said - it is true that the
segmentation module works "better", and I suppose the bugs a
Hi Amir,
according to your screenshots, the issue you describe is solved in the current
master. See also bug http://bugs.mitk.org/show_bug.cgi?id=11477
MITK did not handle left handed geometries very well.
You can verify that, by building the MITK master by yourself (as you already
did).
You ca
Sorry, I meant m_ResultNode->SetBoolProperty as 2nd example.
Von: Kislinskiy, Stefan [mailto:s.kislins...@dkfz-heidelberg.de]
Gesendet: Donnerstag, 11. Juli 2013 10:56
An: Pedro Cardoso; mitk-users@lists.sourceforge.net
Betreff: Re: [mitk-users] Segmentation Outline
Hi,
#include
m_ResultN
Hi,
#include
m_ResultNode->SetProperty("outline", mitk::BoolProperty::New(true));
or
m_ResultNode->SetProperty("outline", true);
Best,
Stefan
Von: Pedro Cardoso [mailto:woundwort1...@gmail.com]
Gesendet: Donnerstag, 11. Juli 2013 02:38
An: mitk-users@lists.sourceforge.net
Betreff: [mitk-u
Hi Stefan,
thank for reporting this issue. I was able to reproduce this bug using the MITK
2012-06 release version. However in our current master this bug seems to be
fixed. Some time ago we made bigger changes to our image reslicing mechanism
which is also used by the segmentation. I think thi
Hi Chris,
thanks für using MITK. Please report this issue on our bugtracking system
http://bugs.mitk.org
There is already a component for everything related to rendering.
Reporting a bug really eases the process of fixing these issues and you can
follow the process or contribute your own ideas
Hello to all!
Thanks for the updates on this subject. I'll keep an eye on the mailing
list and on the bug tracker. As I said, at this stage I might not be
able to usefully contribute to the code, given that I'm still a bit out
of the "mechanics" involved. I'll study the subject and contribute
nal Message-
> From: Yves Martelli [mailto:ymarte...@cistib.upf.edu]
> Sent: Monday, October 05, 2009 9:26 AM
> To: mitk-users@lists.sourceforge.net
> Subject: Re: [mitk-users] Segmentation on reoriented planes
>
> Dear Samuel,
> Just to confirm that we are still at the same po
[mailto:d.male...@dkfz-heidelberg.de]
Sent: lunes, 05 de octubre de 2009 8:02
To: mitk-users@lists.sourceforge.net
Subject: Re: [mitk-users] Segmentation on reoriented planes
On Thu, 2009-10-01 at 16:43 +0100, Samuel Silva wrote:
> Hi!
>
> I was wondering how are things going regarding segmen
On Thu, 2009-10-01 at 16:43 +0100, Samuel Silva wrote:
> Hi!
>
> I was wondering how are things going regarding segmentation on
> reoriented planes. This would be a valuable feature for me also.
> I will probably not be able to help much on the development but if you
> need anyone to test it I w
Hi!
I was wondering how are things going regarding segmentation on
reoriented planes. This would be a valuable feature for me also.
I will probably not be able to help much on the development but if you
need anyone to test it I will be glad to help.
Best regards,
Samuel
Seitel Mathias wrote:
-heidelberg.de]
Sent: viernes, 18 de septiembre de 2009 10:53
To: Yves Martelli; mitk-users@lists.sourceforge.net
Cc: Schwarz Tobias
Subject: RE: [mitk-users] Segmentation on reoriented planes
Hi Yves,
Thanks for your report. The mitk::ExtractDirectedPlaneImageFilter is mostly
based on code from the MITK
Hi Yves,
Thanks for your report. The mitk::ExtractDirectedPlaneImageFilter is
mostly based on code from the MITK rendering module, namely from
mitk::ImageMapper2D. Part of this code may be rendering-specific and
therefore appear cumbersome when just using this filter to extract
slices.
You
Hi Sascha,
On Fri, Jan 23, 2009 at 3:02 PM, Zelzer Sascha
wrote:
> Hi,
>
> there are some known MITK runtime problems with ITK 3.10 (although MITK
> compiles with it). ITK 3.8 works fine.
>
> Maybe someone with more insight into the ITK 3.10 integration can tell you if
> your problems are relat
Hi,
there are some known MITK runtime problems with ITK 3.10 (although MITK
compiles with it). ITK 3.8 works fine.
Maybe someone with more insight into the ITK 3.10 integration can tell you if
your problems are related to this specific version.
Cheers,
Sascha
> -Ursprüngliche Nachricht---
Hi Stephan,
thanks for finding out / reporting this. I will add it to the build
instructions. By the way, at our department we are ususally using the
VTK included with ubuntu, it works fine!
Regards
Marco
Stephan Wirth wrote:
> On Tue, Jul 8, 2008 at 3:28 PM, Stephan Wirth <[EMAIL PROTECTED]>
On Tue, Jul 8, 2008 at 3:28 PM, Stephan Wirth <[EMAIL PROTECTED]> wrote:
> [EMAIL PROTECTED]:~/src/mitk-build/bin$ ./Step4
> ../../mitk/Testing/Data/Pic3D.pic.gz ../../mitk/Testing/Data/lungs.vtk
> QmitkRegisterClasses()
> CoreObjectFactory: created instance of CoreObjectFactory
> Loading ../../mit
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