Hi all,
Being a user of Adobe products, I am use to having a very customizable working
environment so that you could easily improve overall workflow and decrease
fumbling time. I find myself wanting my productivity to increase when using
PyMOL. While I do input a lot of my commands by hand,
Hi Sean,
On Fri, Feb 12, 2010 at 12:39 PM, Sean Law wrote:
> Hi all,
>
> Another feature that I find myself always wanting is a "kill script" button
> and/or command. This comes in handy when I am testing a new python script
> and, accidentally, throw in an infinite loop. It would be nice to
Hi all,
Another feature that I find myself always wanting is a "kill script" button
and/or command. This comes in handy when I am testing a new python script and,
accidentally, throw in an infinite loop. It would be nice to have some sort of
kill switch not only for python scripts but even f
On Thu, Jan 21, 2010 at 6:10 AM, Schubert, Carsten [PRDUS] <
cschu...@its.jnj.com> wrote:
> 4) A better density wizard, let's just copy coot and be done with it.
> Ability to dynamically bind density levels or some other properties to
> the scroll-wheel for that matter.
>
+1
> 6) Integration/bu
On Thu, Jan 21, 2010 at 9:19 AM, Adrian Schreyer wrote:
> I think a page where features ideas can be posted and voted up or down
> would be very helpful (like Google product ideas) to collect feature
> requests and see which ones are the most demanded.
>
> Adrian
Let's do this. Head over to http
- It would be nice if pymol could deal with/generate viral surfaces
similar to this one:
http://www.pnas.org/content/100/12/6899/F2.medium.gif
I make all my images with pymol but have to switch to chimera for the
viral surface.
- I would also find useful if pymol could easily export a list o
I think a page where features ideas can be posted and voted up or down
would be very helpful (like Google product ideas) to collect feature
requests and see which ones are the most demanded.
Adrian
--
Throughout its 18-ye
Jason,
here are my feature requests, only slightly biased by the fact that some
of them would be useful for my paper now (-:
1) arbitrary clipping planes bound to an object with an intelligent gui
to place them. Something akin to be found in Maestro or semi-transparent
CGO objects which can be ma
On Thu, Jan 21, 2010 at 10:47 AM, Tsjerk Wassenaar wrote:
> Hi Sean e.a.,
I really meant Jason e.a. :$
T.
--
Tsjerk A. Wassenaar, Ph.D.
Computational Chemist
Medicinal Chemist
Neuropharmacologist
--
Throughout its 18
Hi Sean e.a.,
In reply to your messages, first an overview as I picked up from the
other mails:
1. eMovie integration (Simon Kolstoe)
2. Powerpoint plugin (Roger Rowlett)
3. Enhanced morphing (ibid)
4. Foolproof download (David Hall)
5. DynoPlot integration (ibid)
6. Improved undo/redo (ibid)
7.
David,
Some good suggestions, but I think too localized to you, specifically.
My comments follow.
> 1) I would love it if the PDB Loader Service Plugin would clean up what it
> left in /tmp on pymol exit. I have a feeling this might be complicated
> though. I just have a bad memory when I fi
hould be, but something would be good. Again, losing that
perfect view or such can be painful.
-David
- Original Message
> From: Jason Vertrees
> To: pymol-users@lists.sourceforge.net
> Sent: Tue, January 19, 2010 11:26:39 PM
> Subject: [PyMOL] New Feature Ideas
>
&
Roger,
Both of these features are available to PyMOL subscribers already.
You can get AxPyMOL which has the ActiveX plugin for PowerPoint.
There is no need to "tab out" of your presentation. Also in the
incentive version is "RigiMOL" the molecular morpher. We could
probably clean up the interfac
Adrian,
My comments follow.
> 1) set pdb_mirror option to be able to use a European (EBI) mirror for
> example. The RCSB mirror is rather slow from Europe.
This is a good idea; allowing people to set their own server.
> 2) uppercase support for fetch_path; currently only lowercase file
> names
Two items come to mind:
1. A Powerpoint plugin for live Pymol viewing in presentations.
2. A simpler method of doing structure morphs in Pymol. Intelligent
morphing is incredibly powerful for visualizing protein conformational
changes based on "endpoint" protein structures, or just
evaluating/
- Original Message
> From: Adrian Schreyer
> To: jason.vertr...@schrodinger.com; PyMOL-users@lists.sourceforge.net
> Sent: Wed, January 20, 2010 10:00:03 AM
> Subject: [PyMOL] New Feature Ideas
>
> Something more challenging:
>
> 3) Export scenes as webGL.This
Hi Jason,
here are two minor improvements:
1) set pdb_mirror option to be able to use a European (EBI) mirror for
example. The RCSB mirror is rather slow from Europe.
2) uppercase support for fetch_path; currently only lowercase file
names are loaded.
Something more challenging:
3) Export scene
Hi Jason,
I think the number one feature I would like to see is eMovie
incorporated into the standard build of PyMOL. The built in movie
making facilities in PyMOL may be powerful but the scripting is a bit
beyond those of us "biologists who use computers" especially if one is
trying to ma
PyMOLers,
We need to move forward on PyMOL development, so I'm collecting ideas
from all our users on what they most want in future versions of PyMOL.
We already have a page on the PyMOL wiki for this
(http://pymolwiki.org/index.php/Ideas) from 2008/2009. We can discuss
the ideas here and on the
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