Sometimes it is easier to see the overall structure when looking at a
single unit cell rather than the symmetry mates within a certain distance.
You might want to try the supercell
http://www.pymolwiki.org/index.php/Supercell script. Otherwise I tend to
generate symmetry mates multiple times and
Dear pymol users,
I want to operate a structure whose crystal structure has one molecule in one
asymmetry unit. I try to display its polymer. I loaded the structure and used
generate command in the pymol GUI interface: Ageneratesymmetry mates4A,
and then many copies of this molecure appeared
Hi Yeping Sun,
A linear polymer is likely to apparent when you look at a large number of
symmetry mates. Looking at lots of symmetry mates in cartoon view is quite
intensive and can be slow unless you have a powerful graphics card - if you
show the first molecule as 'ribbon' and then generated
Hi Humayun,
Yes, then you seem to be left with docking as the only option. There
are servers for that too, but since you want to do six-body docking,
you may need to contact somebody for assistance/guidance.
Cheers,
Tsjerk
On Wed, May 19, 2010 at 1:11 PM, humayun scherrif hum@gmail.com
Thank you all and certainly seems llike now I am going to some right
direction.
I have read some discussion part (page 14) of the paper Maia sent, as stated
below, the BSA ( value for my dimer interfaces are ~1000 (as predicted by
PISA) which according to the Krissinel paper, is biological
Hi,all,
I am encountering a problem with symmetry mates generated by pymol. It
seems that the naming system in pymol and ccp4-supported ACT program are
not consistent. I have tested several pdbs in P4212 space group and
attempted to figure out the relationship between these two, but failed. I
[mailto:fangsh...@mbi.ucla.edu]
Sent: Thu 9/17/2009 4:52 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] Pymol Symmetry Mates Naming
Hi,all,
I am encountering a problem with symmetry mates generated by pymol. It
seems that the naming system in pymol and ccp4-supported ACT program
