В Wed, 21 Feb 2024 06:09:51 +
James Powell пишет:
> This was working fine until yesterday when I had error messages
> trying to install some packages. See enclosed “S2” for example. It
> looks like it is trying to download a file as part of the
> installation, but of course can’t.
Since
В Sat, 17 Feb 2024 11:15:43 -0700
"Reed A. Cartwright" пишет:
> I'm wrapping a function in R and I want to record all the arguments
> passed to it, including default values and missing values.
This is hard if not impossible to implement for the general case
because the default arguments are
В Wed, 10 Jan 2024 19:13:19 -0500
Deepankar Basu пишет:
> I am drawing contour lines for a function of 2 variables at one level
> of the value of the function and want to include a small arrow in any
> direction of increase of the function. Is there some way to do that?
Can you use the
В Sat, 13 Jan 2024 20:33:47 + (UTC)
varin sacha via R-help пишет:
> coef(lm(Score~ Time + factor(Country)),data=data[idx,])
Wrong place for the data=... argument. You meant to give it to lm(...),
but in the end it went to coef(...). Without the data=... argument, the
formula passed to lm()
В Tue, 9 Jan 2024 16:42:32 +
Nick Wray пишет:
> she has a problem with R studio on her laptop
Does the problem happen with plain R, without Rstudio?
What's the student's sessionInfo()?
> I have a screenshot which could email if anyone needs to see what it
> looks like.
I think that PNG
On Mon, 29 Jan 2024 14:19:21 +0200
Micha Silver wrote:
> Is there some option to force printing the full list?
> df <- data.frame("name" = "A", "bands" = I(list(1:20)))
format.AsIs is responsible for printing columns produced using I(). It
accepts a "width" argument:
format(x, width = )
#
В Wed, 10 Apr 2024 09:33:19 +0200
Sigbert Klinke пишет:
> decreasing=c(F,F,F)
This is only documented to work with method = 'radix':
>> For the ‘"radix"’ method, this can be a vector of length equal to
>> the number of arguments in ‘...’ and the elements are recycled as
>> necessary. For the
В Fri, 12 Apr 2024 12:15:07 +
Iago Giné Vázquez пишет:
> f <- function(whatever){
>...
>g <- function(whatever2){
> ...
>}
>...
> }
>
> If I wanted to debug some thing directly inside f I would do
> debug(f). But this does not go inside g code. On the other hand,
>
В Fri, 12 Apr 2024 12:53:02 +
Iago Giné Vázquez пишет:
> How should I call trace() if f was a function?
Let the tracer be quote(debug(g)) and use as.list(body(f)) to determine
where it should be injected:
f <- function() {
message('exists("g") so far is ', exists('g'))
g <- function() {
В Thu, 18 Apr 2024 11:08:33 +0200
SIBYLLE STÖCKLI via R-help пишет:
> > #to check the index numbers of all imported raster list elements
> > allrasters
> list()
> >
> > #call single raster element
> > allrasters[[1]]
> Error in allrasters[[1]] : subscript out of bounds
`allrasters` is an
В Thu, 18 Apr 2024 19:04:04 +0200
пишет:
> Solution: direct and full path to the .tif files.
> I confused back and forward slash
Congratulations on solving the problem yourself!
Here's a few more options that could be useful in the future:
1. Double the backslashes. Between single quotes
В Thu, 18 Apr 2024 16:31:46 +
"Deramus, Thomas Patrick" пишет:
> Basically, each list contains a set of doubles, with the first
> indicating a specific index (based on the 0 beginning python index),
> and a certain value (e.g. 0.5).
>
> What I would like to do is generate set of columns
Dear Evelina Ballato,
В Tue, 30 Apr 2024 10:36:32 +
Evelina Ballato пишет:
> In the Openair package it is possible to restore the import csv file
> function?
This question is best addressed to the maintainer of the package (see
the output of maintainer("openair")) if not to their GitHub
В Wed, 8 May 2024 16:59:25 +
Simon Andrews пишет:
> The lapack libraries are:
>
> $ rpm -qa | grep lapack
> lapack-3.9.0-10.el9.x86_64
> lapack64_-3.9.0-10.el9.x86_64
> lapack64-3.9.0-10.el9.x86_64
> lapack-devel-3.9.0-10.el9.x86_64
Thanks for this information! I figured out I needed to
Dear Tatiana, Marvin & Paul,
If you don't get a better answer here, try
r-sig-mixed-mod...@r-project.org.
On Fri, 3 May 2024 11:29:19 +
"Bielakova Tatiana" wrote:
> Based on the documentation of nlme package, the function interval is
> supported for gls, lme, and lmList classes. Although
Just one more thing: when you do find a solution, can you please share
it with us?
I do trust nlraa::boot_nlme() as it's been deliberately written for
nonlinear mixed-effects models, but the fact that intervals() is
inherited from the 'lme' class without any mention of nonlinear models
in the
Glad you got R working!
В Thu, 9 May 2024 12:19:49 +
Simon Andrews пишет:
> Does this need reporting upstream as a bug in R or lapack?
Maybe in AlmaLinux (and I think RHEL9 too, but that's up to Miguel
Esteva). Best case scenario, they somehow built the reference BLAS and
LAPACK packages
Dear Miguel Esteva,
I couldn't get a Red Hat "ubi9" container to install enough
dependencies to build R. Is there a way to reproduce your setup on a
virtual machine somewhere?
On Fri, 3 May 2024 00:42:43 +
Miguel Esteva via R-help wrote:
> *** caught segfault ***
>
> address
В Wed, 1 May 2024 16:57:18 +
"Howard, Tim G \(DEC\) via R-help" пишет:
> Is this real?
Yes, but with a giant elephant in the room that many are overlooking.
It has actually always been much worse.
Until R-4.4.0, there used to be a way for readRDS() to return an
unevaluated "promise
В Wed, 1 May 2024 11:32:32 -0400
Carl Witthoft пишет:
> but as.double('123e') returns 123 -- or whatever the first digit is.
Nicely spotted problem!
Prof. Brian D. Ripley has fixed it in R-devel revision 86436 [*]. Now
as.double('123e') will also return NA. I think that the fix will become
В Fri, 3 May 2024 19:45:08 +
"Boylan, Ross via R-help" пишет:
> & $R CMD check .
> * checking for file './DESCRIPTION' ... ERROR
> Required fields missing or empty:
> 'Author' 'Maintainer'
You're checking a source package directory. This could work, but it's
much easier and more reliable
В Fri, 10 May 2024 03:46:54 +
"Boylan, Ross" пишет:
> The devtools::check() documentation mentions it invoke
> pkgbuild::build() and rcmdcheck::rcmdcheck(). Since I'm guessing my
> command line build and check invoked those last 2, or at least
> operated similarly, they seem less likely
В Mon, 13 May 2024 06:08:22 -0400
Duncan Murdoch пишет:
> The row and column names don't appear to be controllable from that
> menu, they seem (on my machine) to be displayed in the same colour as
> the background of a dialog box, i.e. some kind of gray. I don't
> think R tries to control that
(Sorry for only getting back to this more than a month later.)
В Mon, 8 Apr 2024 17:03:00 +
Jorgen Harmse пишет:
> What is the policy for changing something that is wrong? There is a
> trade-off between breaking old code that worked around a problem and
> breaking new code written by people
В Tue, 7 May 2024 16:57:14 +0200
gavin duley пишет:
> aes(label=current_rownames,
> colour=wine.data.filt$Treatment
> )
As you've noticed, aes() remembers variables by their name and
environment, not by value:
str(ggplot2::aes(label = foo))
# List of 1
# $ label: language ~foo # <--
Dear Ricardo Villalba,
Thank you for spotting this corner case!
В Mon, 13 May 2024 11:37:57 -0300
Ricardo Villalba пишет:
> I track the messages to be coded here:
> https://github.com/r-devel/r-svn/blob/abe625945c4402cd2bb97b5a64e7469db3e904f0/src/main/altclasses.c#L580
> and here
>
В Tue, 7 May 2024 09:51:55 +
Iago Giné Vázquez пишет:
> In the View help, it is told that:
>
> On Windows, the initial size of the data viewer window is taken
> from the default dimensions of a pager (see Rconsole), but adjusted
> downwards to show a whole number of rows and columns.
В Wed, 8 May 2024 14:25:08 +
Simon Andrews пишет:
> #8 0x73f87c0b in dgesv (
> n=12884901891, nrhs=4294967299,
> a=,
> lda=12884901891, ipiv=...,
> b=,
> ldb=12884901891, info=0
> ) at /usr/src/debug/lapack-3.9.0-10.el9.x86_64/SRC/dgesv.f:167
> #9 0x750b2a17 in La_solve
Dear Simon,
В Wed, 8 May 2024 10:17:41 +
Simon Andrews via R-help пишет:
> I'm having a strange problem compiling R4.4.0 on an AlmaLinux9 box.
> make[4]: Entering directory '/bi/apps/R/R-4.4.0/src/library/grDevices'
> byte-compiling package 'grDevices'
>
> *** caught segfault ***
>
Hello R-help,
I've noticed that my 'parallel' jobs take too much memory to store and
transfer to the cluster workers. I've managed to trace it to the
following:
# `payload` is being written to the cluster worker.
# The function FUN had been created as a closure inside my package:
Dear Luke,
Thank you for the detailed explanation of the power of force()! It does
solve my problem in a much more reliable manner than setting function
environments manually.
On Fri, 8 Mar 2024 15:46:52 -0600 (CST)
luke-tier...@uiowa.edu wrote:
> Having a reference to a large environment is
В Tue, 12 Mar 2024 07:43:08 +
Maria Del Mar García Zamora пишет:
> Error: package or namespace load failed for ‘Rcmdr’:
> .onLoad failed in loadNamespace() for 'tcltk2', details:
> call: file.exists("~/.Rtk2theme")
> error: file name conversion problem -- name too long?
>
> Once this
Dear Maria,
I'm sorry for somehow completely missing the second half of your
message where you say that you've already tried the workaround.
В Tue, 12 Mar 2024 07:43:08 +
Maria Del Mar García Zamora пишет:
> I have tried to start R from CDM using: C:\Users\marga>set
>
В Tue, 12 Mar 2024 14:57:28 +
CALUM POLWART пишет:
> That's almost certainly going to be either the utf-8 character in the
> path
The problem, as diagnosed by Maria in the first post of the thread, is
that the user home directory as known to R is stored in the ANSI
encoding instead of
В Wed, 13 Mar 2024 19:01:59 +0530
Christofer Bogaso пишет:
> I need simulate mouse click in windows machine at certain coordinate
> on screen and hold the click for certain seconds e.g. for 5 seconds
There's no interface for this in base R. It's always possible to write
some Windows API code to
В Thu, 21 Mar 2024 18:45:35 +
Jorgen Harmse via R-help пишет:
> The problem may have been that this package is so important to me
> that I put it in .Rprofile. The package was not installed for the new
> version of R, so every R session started with an annoying error
> message. Presumably a
В Thu, 14 Mar 2024 14:12:12 +
Subia Thomas OI-US-LIV5 пишет:
> Using write.xlsx to extract data from an Excel file, I get this error
> message.
>
>
> Error in .jcall("RJavaTools", "Ljava/lang/Object;", "invokeMethod",
> cl, : java.lang.OutOfMemoryError: GC overhead limit exceeded
There
В Wed, 20 Mar 2024 16:02:27 +
Jorgen Harmse via R-help пишет:
> > install.packages(tar,type='source',repos=NULL)
>
> Error in library(jhBase) : there is no package called ‘jhBase’
>
> Execution halted
>
> Warning in install.packages(tar, type = "source", repos = NULL) :
>
>
В Wed, 20 Mar 2024 12:37:39 -0400
Ben Bolker пишет:
> Ivan, can you give more detail on this? I've heard this issue
> mentioned, but when I open RStudio and run find("install.packages")
> it returns "utils::install.packages", and running dump() from within
> RStudio console and from an
В Wed, 20 Mar 2024 19:26:53 +
Jorgen Harmse пишет:
> Thank you. tools:::.install_packages works.
I'm glad it works, but it shouldn't be necessary to use (and is not
part of the API: not documented to keep working this way).
Since you're already using devtools, perhaps devtools::install
В Wed, 20 Mar 2024 17:00:34 +
Jorgen Harmse пишет:
> Thank you, but I think I was already using utils.
>
> Regards,
> Jorgen.
>
>
> > environment(install.packages)
>
>
>
> >
В Fri, 22 Mar 2024 14:02:09 -0500
Val пишет:
> X2.R
> load("X1.RData")
>
> I am getting this error message:
> Error in load("X1.RData", :
> bad restore file magic number (file may be corrupted) .. no data
> loaded.
This error happens very early when R tries to load the file, right
at the
В Fri, 22 Mar 2024 14:31:17 -0500
Val пишет:
> How do I get the first few bytes?
What does file.info('X1.RData') say?
Do you get any output if you run print(readBin('X1.RData', raw(), 128))?
If this is happening on a Linux or macOS machine, the operating system
command xxd -l 128 X1.RData
В Fri, 22 Mar 2024 14:52:05 -0500
Val пишет:
> : 8d5a 35f8 1ac5 cc14 a04e be5c 572f a3ad .Z5..N.\W/..
> 0010: 6210 7024 9b58 93c7 34d0 acb7 7a82 3f99 b.p$.X..4...z.?.
Thank you!
This doesn't look like any structured data to me. In particular, it
doesn't look like something
В Fri, 22 Mar 2024 16:11:14 +
MACHO Siegfried via R-help пишет:
> If I type the command:
> Dir <- "C/Users/macho/Documents/_LVn/Experimentelle _bungen"
> in the R console there is no problem. However, if I put the same
> command into a source file (e.g. Test.r) and call this file from R
>
В Fri, 5 Apr 2024 16:08:13 +
Jorgen Harmse пишет:
> if duplicated really treated a row name as part of the row then
> any(duplicated(data.frame(…))) would always be FALSE. My expectation
> is that if key1 is a subset of key2 then all(duplicated(df[key1]) >=
> duplicated(df[key2])) should
В Tue, 9 Apr 2024 12:04:26 +0200
Adelchi Azzalini пишет:
> res <- CEoptim(sumsqrs, f.arg = list(xt), continuous = list(mean =
> c(0, 0, 0), sd = rep(1,3), conMat = A, conVec = b), discrete =
> list(categories = c(298L, 298L), smoothProb = 0.5),N = 1, rho
> = 0.001)
>
> Error in
В Tue, 9 Apr 2024 09:55:06 +0200
gernop...@gmx.net пишет:
> If I only move away /usr/local/lib/libomp.dylib, I can still install
> it. So it seems that also here the internal libomp.dylib from R is
> used. Just the bundled omp files at /usr/local/include (omp-tools.h,
> omp.h, ompt.h) seem to be
Hello Mark,
В Fri, 5 Apr 2024 03:58:36 + (UTC)
Mark Webster via R-help пишет:
> I found what looks to me like an odd edge case for duplicated(),
> unique() etc. on data frames with zero columns, due to duplicated()
> returning a zero-length vector for them, regardless of the number of
>
В Sun, 7 Apr 2024 23:47:52 -0600
Dave Dixon пишет:
> > second_records <- read.csv(file_name, skip = 2459465, nrows = 5)
It may or may not be important that read.csv defaults to header =
TRUE. Having skipped 2459465 lines, it may attempt to parse the next
one as a header, so the second call
В Mon, 8 Apr 2024 10:29:53 +0200
gernophil--- via R-help пишет:
> I have some weird issue with using multithreaded data.table in macOS
> and I am trying to figure out, if it’s connected to my libomp.dylib.
> I started using libomp as stated here:
> https://mac.r-project.org/openmp/
Does the
В Mon, 26 Feb 2024 09:02:56 +0100
SIBYLLE STÖCKLI via R-help пишет:
> In the following code, which loads the tiff file, I get the following
> error
This warning is definitely worth investigating, but it shouldn't
interrupt your code. Does the figure come out wrong after you see this
warning?
>
В Fri, 1 Mar 2024 10:54:08 -0500
Benjamin Tyner пишет:
> > dput(letters, file = stderr())
> c("a", "b", "c", "d", "e", "f", "g", "h", "i", "j", "k", "l",
> "m", "n", "o", "p", "q", "r", "s", "t", "u", "v", "w", "x", "y",
> "z")
> Warning message:
> In dput(letters,
В Sat, 24 Feb 2024 03:08:26 +
Leo Mada via R-help пишет:
> Are there any tools to extract the function names called by
> reverse-dependencies?
For well-behaved packages that declare their dependencies correctly,
parsing the NAMESPACE for importFrom() and import() calls should give
you the
В Wed, 28 Feb 2024 13:44:49 +
"Ebert,Timothy Aaron" пишет:
> readLines(file, encoding='utf-16LE')
There are two ways you could encounter an encoding in R.
First are encoding markers placed on every string object, which declare
the string to be encoded in UTF-8, Latin-1, the native locale
В Fri, 1 Mar 2024 10:46:53 -0500
Benjamin Tyner пишет:
> my platform info:
>
> Platform: x86_64-pc-linux-gnu (64-bit)
> Running under: Ubuntu 22.04.4 LTS
Quick things first: have you installed all the build-dependencies? apt
build-dep r-base (maybe with --install-suggests? haven't
В Mon, 26 Feb 2024 11:52:13 +0100
пишет:
> TIFFOpen: figures/AES_network_bymembership.tiff: Cannot open.
> Warning message:
> In dev.off() :
> unable to open TIFF file 'figures/AES_network_bymembership.tiff'
In the current directory (see getwd()), is there a subdirectory named
"figures"? Do
В Tue, 21 May 2024 11:29:33 +0200
Laurent Rhelp пишет:
> pos <- seek(con_in,2,origin="start")
> # We have to repeat the command to return the good amount of read
> # bytes
> print(paste0("pos is not equal to 2, pos = ",pos))
That's because seek() returns the previous position ("before any
В Sat, 1 Jun 2024 16:16:23 +
Leo Mada via R-help пишет:
> When highlighting pdf-documents with Microsoft Edge, the bounding box
> is sometimes misplaced, and quite ugly so. It also lacks the ability
> to draw lines or arrows.
>
> On the other hand, I did not get used to Acrobat Reader: it
В Wed, 5 Jun 2024 19:07:19 -0500
I B пишет:
> However, I am getting the following error: *"Argument is of length
> zero."*
> if (selected_graph() == cols$column2 | selected_model() == "Main
> effects model") {
The error must be coming from here.
At least one of selected_graph(),
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