Re: [R-pkg-devel] Referring to data in R/sysdata.rda

2017-04-15 Thread Spencer Graves
x) { junk <- yrPkg:::myDF[index] return(junk) } This will turn of similar messages is slightly different contexts. I don't know if it will work here (and I don't have time to try it myself now). Spencer Graves RStudio will warn that myDF is out of scope. My question is if

Re: [R-pkg-devel] CRAN and cmake

2017-05-23 Thread Spencer Graves
find what they want. See "https://user2017.brussels/news/2017/navigating-the-r-package-universe;.) Spencer Graves Hth, Dirk __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] Producing ß in help files.

2018-01-05 Thread Spencer Graves
On 2018-01-05 21:41, Rolf Turner wrote: On 06/01/18 16:19, Spencer Graves wrote: On 2018-01-05 20:52, Rolf Turner wrote: In a help file that I am writing I wish to cite an item by a bloke whose surname is Weiß.    Write it "Weiss".    See "https://en.wikiped

Re: [R-pkg-devel] Producing ß in help files.

2018-01-05 Thread Spencer Graves
ish latin alphabet.  These include "ß" = "ss", "ä" = "ae", "ö" = "oe" and "ü" = "ue".   Spencer Graves In LaTeX I would use the macro \ss, but Rd files don't accept that. Is there any way that I can create

Re: [R-pkg-devel] Submission to CRAN when package needs personal data (API key)

2018-09-05 Thread Spencer Graves
The fda package disables some tests on CRAN using: if(!fda::CRAN()){     test you don't want run on CRAN }   I've used this in other contexts with tests that are too long to run on CRAN but that I want to run otherwise during "R CMD check".       Spencer Graves On 2018-0

Re: [R-pkg-devel] Submission to CRAN when package needs personal data (API key)

2018-09-05 Thread Spencer Graves
On 2018-09-05 12:52, Gábor Csárdi wrote: On Wed, Sep 5, 2018 at 6:34 PM Spencer Graves wrote: The fda package disables some tests on CRAN using: if(!fda::CRAN()){ test you don't want run on CRAN } Seemingly this just checks for a couple of (5 by default) environment variables

Re: [R-pkg-devel] Submission to CRAN when package needs personal data (API key)

2018-09-07 Thread Spencer Graves
key:  That's optional.   Spencer Graves Duncan Murdoch Cheers, Rainer Duncan Murdoch __ R-package-devel@r-project.org <mailto:R-package-devel@r-project.org>mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel --

Re: [R-pkg-devel] Submission to CRAN when package needs personal data (API key)

2018-09-08 Thread Spencer Graves
On 2018-09-08 14:02, Joshua Ulrich wrote: Hi Rainer, On Wed, Sep 5, 2018 at 2:28 AM, Rainer Krug wrote: Hi I have a package at GitHub (https://github.com/rkrug/ROriginStamp) which I am pre[paring for CRAN. It creates a trusted timestamp using the API fro OriginStamp

Re: [R-pkg-devel] Package Etiquette

2018-09-09 Thread Spencer Graves
existing package author worry about maintaining what s/he has already written and maintained.  I can worry about other things.   Hope this helps.   Spencer Graves I sense that by actually asking the question (good move!) you already have an inkling about the answer. So indeed, _ex a

Re: [R-pkg-devel] Submission to CRAN when package needs personal data (API key)

2018-09-07 Thread Spencer Graves
that function "CRAN()"! Since then, I've had other occasions to use it.       Spencer Graves -- Sent from Gmail Mobile [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/

Re: [R-pkg-devel] some notes

2018-04-24 Thread Spencer Graves
ve been told that this is a suboptimal solution and should be avoided.  I agree.   Hope this helps.       Spencer Graves You don't have a lot of control of elapsed time because it will depend on what else is happening on the test machine, but if the other times are short, usually elapsed time will a

Re: [R-pkg-devel] some notes

2018-04-24 Thread Spencer Graves
On 2018-04-24 12:23, Uwe Ligges wrote: > > > On 24.04.2018 19:15, Spencer Graves wrote: >> >> >> On 2018-04-24 12:01, Duncan Murdoch wrote: >>> On 24/04/2018 12:48 PM, Uwe Ligges wrote: >>>> >>>> >>>> On 24

Re: [R-pkg-devel] some notes

2018-04-24 Thread Spencer Graves
On 2018-04-24 12:01, Duncan Murdoch wrote: On 24/04/2018 12:48 PM, Uwe Ligges wrote: On 24.04.2018 18:45, Spencer Graves wrote: [... deleting irrelevant stuff...]     If it becomes infeasible to find smaller datasets, etc., you can cut out certain tests with a construct like

Re: [R-pkg-devel] library dlstats -> cran_stats()

2018-03-16 Thread Spencer Graves
, for example.   That's what it says in the DESCRIPTION file of the "dlstats" package, available at "http://finzi.psych.upenn.edu/R/library/dlstats/DESCRIPTION;.   Spencer Graves -Mark Op vr 16 mrt. 2018 om 12:30 schreef Knut Krueger <rh...@krueger-family.de&g

Re: [R-pkg-devel] Avoid reprocessing Rmd vignette

2018-03-20 Thread Spencer Graves
On 2018-03-20 06:17, Johannes Ranke wrote: ... The idea exposed by Dirk is the same: requireNamespace will find the package on CRAN and will set eval=TRUE. What you want though is to avoid running a chunk on CRAN, even if the package is available. So you need to set eval=FALSE

Re: [R-pkg-devel] How to write example results to a tempdir()?

2018-04-26 Thread Spencer Graves
ot; later in the code, which could be a problem if I have multiple exit points.  I don't know how it would work in a vignette or the examples section of a *.Rd file.  tryCatch(..., finally = setwd(savedir)) condenses this into one line ... and is too terse for me in many cases.   Spen

[R-pkg-devel] DLL 'Matrix' not found: maybe not installed for this architecture?

2019-02-25 Thread Spencer Graves
��� Thanks, ����� Spencer Graves Forwarded Message Subject:winbuilder: Package Ecfun_0.2-0.tar.gz has been checked and built Date: Mon, 25 Feb 2019 04:08:22 +0100 From: lig...@statistik.tu-dortmund.de To: spencer.gra...@effectivedefense.org CC: lig...@statistik.tu-d

[R-pkg-devel] clang: error: unsupported option '-fopenmp'

2019-05-03 Thread Spencer Graves
Hello, All:   I'm getting "clang: error: unsupported option '-fopenmp'" when trying to build "https://github.com/helske/bssm; under macOS 10.14.14 with R 3.6.0;  see below.   What do you suggest?   Thanks,   Spencer Graves p.s.  I assume I have to ins

Re: [R-pkg-devel] URL of a frame (or a vignette)?

2019-09-01 Thread Spencer Graves
15:57 To: Spencer Graves; Jeff Newmiller; r-package-devel@r-project.org Subject: Re: [R-pkg-devel] URL of a frame (or a vignette)? It may be better to use the canonical url, https://cran.r-project.org/package=bssm, as in: https://cran.r-project.org/package=bssm/bssm.pdf By the way

[R-pkg-devel] unable to run 'make clean' in 'src'

2019-09-18 Thread Spencer Graves
  This is trying to build a local clone of "https://github.com/sbgraves237/bssm;, which is only slightly different from "helske/bssm".   What do you suggest?   Thanks,   Spencer Graves p.s. "https://stackoverflow.com/questions/28723882/problems-installi

Re: [R-pkg-devel] unable to run 'make clean' in 'src'

2019-09-19 Thread Spencer Graves
;) library("installr") install.Rtools()   I uninstalled Rtools, then installed them using this, and that problem disappeared.  Now I'm dealing with '"pdflatex" not found". I'll discuss that in a new thread.   Thanks,   Spencer Graves On 2019-09-18 06:3

Re: [R-pkg-devel] Warning in system2(..., stdout = FALSE, stderr = FALSE) :, '"pdflatex"' not found

2019-09-19 Thread Spencer Graves
On 2019-09-19 12:19, Tomas Kalibera wrote: On 9/19/19 6:29 AM, Spencer Graves wrote: Update: A web search for 'installing pdflatex for "R CMD" on Windows 10?' suggested I install MiKTeX.  I did that from miktex.org, and it got me past that error.  Spencer Please note th

[R-pkg-devel] incomplete final line found on 'growth_model.log'

2019-09-20 Thread Spencer Graves
  "R CMD build bssm" on a Windows 10 machine ends by complaining, "  incomplete final line found on 'growth_model.log'". This problem was not fixed by adding a couple of blank lines to 'growth_model.Rmd'.   Suggestions?   Thanks,   Spencer Graves p.

Re: [R-pkg-devel] Warning in system2(..., stdout = FALSE, stderr = FALSE) :, '"pdflatex"' not found

2019-09-19 Thread Spencer Graves
Update:  A web search for 'installing pdflatex for "R CMD" on Windows 10?' suggested I install MiKTeX.  I did that from miktex.org, and it got me past that error.  Spencer On 2019-09-19 01:50, Spencer Graves wrote: Hello, All:   What's the recommended way to get pdflatex

[R-pkg-devel] devtools::build_win()?

2019-10-31 Thread Spencer Graves
ot;devtools::revdep_check()" seems only to identify the reverse dependencies without testing them.   That do you suggest?   Thanks,   Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

[R-pkg-devel] default col.names from data.frame not the same as as.data.frame

2019-12-10 Thread Spencer Graves
quot; but "as.data.frame(matrix(1:2, 1))" defaults to "V1", "V2".         * I want to use a toy example like this in the documentation for "BMA:::bic.glm.matrix" and "BMA:::bic.glm.data.frame", and since "base" R is inco

Re: [R-pkg-devel] compression of vignettes

2019-11-24 Thread Spencer Graves
" included the following: * checking installed package size ... NOTE   installed size is  7.2Mb   sub-directories of 1Mb or more:     doc   6.6Mb   Suggestions?   Thanks,   Spencer Graves On 2019-11-21 11:43, Dirk Eddelbuettel wrote: On 21 November 2019 at 16:43, Joris Meys wrot

[R-pkg-devel] How to submit to CRAN from GitHub?

2019-09-22 Thread Spencer Graves
rstand how to change. NOTE:  "R CMD build Ecdat --resave-data" followed by "R CMD check Ecdat_0.3.3-tar.gz" completed with no errors, warnings or notes under macOS 10.14.6 and Windows 7 and 10.   Thanks,   Spencer Graves Forwarded Message Su

[R-pkg-devel] MiKTex v. TeX Live?

2020-02-24 Thread Spencer Graves
default identify as part of the operating system.   Suggestions?   Thanks,   Spencer Graves p.s.  This is using R 2.6.2 immediately after running "update.packages()". __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

[R-pkg-devel] Internet security software?

2020-02-24 Thread Spencer Graves
nder tech support answers the phone but fails to fix these problems.   Thanks,   Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

[R-pkg-devel] CRAN rules re. web scraping?

2020-01-22 Thread Spencer Graves
sts not to run on CRAN, e.g., with (!fda::CRAN()).   However, I suspect I should be able to do better than that.       Suggestions?   Thanks,   Spencer Graves p.s.  The development version of this package is available at "https://github.com/sbgraves237/Ecf

[R-pkg-devel] finding "logo.jpg" [was: "try" malfunctions on Ubuntu Linux 16.04 LTS, R-release, GCC]

2020-02-03 Thread Spencer Graves
t the current Ecfun package to CRAN. Then I might modify this test sequence to force an error, so I can see more what is happening.   Suggestions?   Thanks,   Spencer On 2020-02-03 03:06, Iñaki Ucar wrote: On Mon, 3 Feb 2020 at 03:16, Spencer Graves wrote: Hello, All: devtoo

Re: [R-pkg-devel] "try" malfunctions on Ubuntu Linux 16.04 LTS, R-release, GCC

2020-02-02 Thread Spencer Graves
Hi, Dirk:   The short answer is that's part of what's on "rhub".   When I run devtools::check_rhub, I get emails with test results from three platforms:  (1) Windows Server 2008 R2 SP1, R-devel, 32/64 bit.  (2) Ubuntu Linux 16.04 LTS, R-release, GCC. And (3) Fedora Linux, R-devel,

[R-pkg-devel] "try" malfunctions on Ubuntu Linux 16.04 LTS, R-release, GCC

2020-02-02 Thread Spencer Graves
ersion of Ecfun, which I want to submit to CRAN as soon as I can do so without offending the sensibilities of the overworked CRAN maintainers.   Suggestions?   Thanks,   Spencer Graves Forwarded Message Subject:Ecfun 0.2-2: ERROR Date: Sun, 02 Feb 2020

Re: [R-pkg-devel] CRAN rules re. web scraping?

2020-01-23 Thread Spencer Graves
https://github.com/sbgraves237/Ecfun".  The package still needs more work, but I will make Prof. Ripley's Feb. 4 deadline.   Thanks again,       Spencer Graves On 2020-01-23 01:55, Iñaki Ucar wrote: On Thu, 23 Jan 2020 at 02:49, Spencer Graves wrote: Hello, All: GOOD NEWS AN

[R-pkg-devel] revdepcheck::revdep_check interpretation problem

2020-02-10 Thread Spencer Graves
ing classroom organizations 2: tscheypidi/magclass  Tools for managing classroom organizations 3: rundel/ghclass   Tools for managing classroom organizations   ** None of that sounds like "gamclass".       What do you suggest?   I should probably ignore this?   Thanks,    

[R-pkg-devel] Error: Symbol \textasciigrave not provided by (textcomp)

2020-02-16 Thread Spencer Graves
.Rd".  Those functions were written to fix parsing errors with names like "Raúl" that had been mangled by different software before I could get it into R.   After a day's work failed to produce a work around, I decided to ask this group.   What do you suggest?  

[R-pkg-devel] How to create a new project on GitHub?

2020-01-15 Thread Spencer Graves
tal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists.   *** What do I need to do to fix the mess I seem to have created and get what I want?   *** Thanks, Spencer Graves p.s.  If you know the fda package, you know

Re: [R-pkg-devel] How to create a new project on GitHub?

2020-01-15 Thread Spencer Graves
ot; Gabor   Thanks.  I now have "https://github.com/sbgraves237/fda;. Then I did "git push --set-upstream origin master", and it seemed to work.   Thanks again.   Spencer On Wed, Jan 15, 2020 at 11:15 PM Spencer Graves wrote: Hello, All: How can I creat

Re: [R-pkg-devel] GitHub problems

2020-03-14 Thread Spencer Graves
s associated with git. > > > > On Sat, 14 Mar 2020 at 2:14 pm, Spencer Graves > <mailto:spencer.gra...@effectivedefense.org>> wrote: > > Hello, All: > > >    What do you suggest Jim Ramsay and I do to migrate the fda > package to GitH

[R-pkg-devel] More GitHub problems

2020-04-20 Thread Spencer Graves
    Thanks,       Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] More GitHub problems

2020-04-21 Thread Spencer Graves
Hi, Ivan et al: On 2020-04-21 02:15, Ivan Krylov wrote: On Mon, 20 Apr 2020 23:44:43 -0500 Spencer Graves wrote: Is there a way to restore the functionality of a local clone of a GitHub repository after the SSH key it used was replaced? Does `git remote -v` in the repo directory show https

[R-pkg-devel] Warning in dir.create(vd2 <- "vign_test"): 'vign_test' already exists

2020-03-15 Thread Spencer Graves
cOS 10.15.3 it finishes fine.   "grep 'vign_test'" failed to find anything.   ???   Thanks,   Spencer Graves p.s.  Running R 3.6.3 on both machines with "update.packates()" clean. __ R-package-devel@r-project.org mail

[R-pkg-devel] GitHub problems

2020-03-13 Thread Spencer Graves
me: SpenceravessMBP:fda sbgraves$ git push remote: Permission to JamesRamsay5/fda.git denied to sbgraves237. fatal: unable to access 'https://892da70262d9a4faa857b8602145414d6b210...@github.com/JamesRamsay5/fda/': The requested URL returned error: 403   Suggest

Re: [R-pkg-devel] GitHub problems

2020-04-03 Thread Spencer Graves
ommit" and "git push".   However, this has my GitHub password in a plain text ".git" file on my hard drive.  I think the hard drive on my computer is encrypted, so maybe that's not a problem.   Am I not allowed to use SSH with a GitHub repository that's not m

Re: [R-pkg-devel] GitHub problems

2020-04-03 Thread Spencer Graves
I had SSH. � Thanks again, ����� Spencer Graves On 2020-04-03 15:17, Max Turgeon wrote: > > Hi Spencer, > > > Did you follow the instructions here? > https://help.github.com/en/github/authenticating-to-github/connecting-to-github-with-ssh > > > Once the key is setup, you

Re: [R-pkg-devel] [BULK] Re: [Rd] "not a valid win32 application" with rtools40-x86_65.exe on Windows 10

2020-05-12 Thread Spencer Graves
rary/rJava/libs/i386/rJava.dll':    LoadLibrary failure: ^1 is not a valid win32 application   The same package on my Mac quits with a LaTeX error I have yet to figure out how to fix.   Suggestions?   Thanks,   Spencer Graves 00install.out: * installing *source* package '

Re: [R-pkg-devel] How to remove rJava from Ecfun when it's not called directly or indirectly

2020-10-16 Thread Spencer Graves
On 2020-10-11 10:34, Enrico Schumann wrote: On Sat, 10 Oct 2020, Spencer Graves writes: Hello, All: "R CMD check Ecfun_0.2-4.tar.gz" fails under Windows 10 with "Error: package or namespace load failed for 'Ecfun': .onLoad failed in loadNamespa

[R-pkg-devel] How to remove rJava from Ecfun when it's not called directly or indirectly

2020-10-10 Thread Spencer Graves
om/sbgraves237/Ecfun I get nothing from "grep 'rJava'" in the DESCRIPTION and NAMESPACE files plus in the man and R subdirectories. I ran tools:package_dependencies recursively starting with Ecfun until I got all NULLs and could not find rJava anywhere. Th

Re: [R-pkg-devel] CRAN pending status , left up in the air

2020-10-19 Thread Spencer Graves
tainer would be asked to specify at least one "Task View" for each package and be willing to discuss overlap, etc., with others. This might be a topic for the next useR conference. Comments? Best Wishes, Spencer Graves best Rafael H M Pereira On Mon, Oc

[R-pkg-devel] installed package size problem on Mac but not Linux nor Windows

2020-09-22 Thread Spencer Graves
Hello, All: R CMD check of "https://github.com/sbgraves237/Ecfun; on Mac produces the following NOTE: * checking installed package size ... NOTE installed size is 5.9Mb sub-directories of 1Mb or more: doc 5.2Mb It doesn't do that with Travis CI[1] nor on a Windows 10

Re: [R-pkg-devel] installed package size problem on Mac but not Linux nor Windows

2020-09-22 Thread Spencer Graves
e run them manually. Or maybe I shouldn't be trying to distribute vignettes like this. Thanks for the reply. Spencer On Tue, 22 Sep 2020 at 5:04 pm, Spencer Graves <mailto:spencer.gra...@effectivedefense.org>> wrote: Hello, All:           R CMD

Re: [R-pkg-devel] [R] a question of etiquette

2020-06-02 Thread Spencer Graves
the world is invited to provide credible source(s).   Spencer Graves On 2020-06-02 10:12, Dirk Eddelbuettel wrote: On 2 June 2020 at 10:06, R. Mark Sharp wrote: | The GPL-2 and GPL-3 licenses are apparently sufficiently ambiguous in the legal community that some companies avoid them. Wittgenstei

Re: [R-pkg-devel] [R] a question of etiquette

2020-06-02 Thread Spencer Graves
On 2020-06-02 10:14, Adelchi Azzalini wrote: In general, "check the license" is a very sensible indication. In the specific case, the Matlab code comes with no licence indication - nothing.   I'm not an attorney, but it's my understanding that "no license indication" is a legal

[R-pkg-devel] RMarkdown vignettes with Wikiversity?

2020-10-22 Thread Spencer Graves
ersity.org/wiki/User_talk:Dave_Braunschweig#RMarkdown_vignettes_with_Wikiversity? Thanks, Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

[R-pkg-devel] "non-ASCII input" and "--data-compress" ignored

2020-07-17 Thread Spencer Graves
and got the same result.   Suggestions?   Thanks,   Spencer Graves sessionInfo() R version 4.0.2 (2020-06-22) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Catalina 10.15.5 Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas

Re: [R-pkg-devel] email misleading: checking CRAN incoming feasibility ... NOTE Maintainer

2020-06-08 Thread Spencer Graves
en't found anything better.  I've recently seen "testthat::skip_on_cran(...)", but I have yet to understand enough of how it works to actually use it.   Thanks,   Spencer Graves On 2020-06-08 09:43, stefano wrote: Hello Uwe, OK sorry for that. Best wishes. *Stefano *

Re: [R-pkg-devel] [R] a question of etiquette

2020-06-02 Thread Spencer Graves
On 2020-06-02 14:24, Avraham Adler wrote: > > > On Tue, Jun 2, 2020 at 5:04 PM Spencer Graves > <mailto:spencer.gra...@effectivedefense.org>> wrote: > > QUESTION:  How much money have people on this list received for what > > they've written?  I've receive

Re: [R-pkg-devel] Note: information on .o files is not available / Found '_exit', possibly from '_exit' (C)

2020-07-17 Thread Spencer Graves
  Can you run the checks only on the subdirectory containing the compiled code?  If yes, then you can run it only on half of that directory and identify it with a binary search.   Some years ago, I found a particularly difficult bug that way.  If I recall correctly, I made a copy of

Re: [R-pkg-devel] "non-ASCII input" and "--data-compress" ignored

2020-07-17 Thread Spencer Graves
fixed the UTF-8 problem and Travis confirmed that it can't make "--resave-data" work, either ;-)  If a CRAN maintainer complains about the compression problem, I can report what I tried and see what they suggest.   Thanks again,   Spencer Graves On 2020-07-17 04:10, Iva

[R-pkg-devel] devtools::release() does not release

2020-11-26 Thread Spencer Graves
ntire devtools::release() transcript, it appears below running under Big Sur on a Mac. Suggestions? Thanks, Spencer Graves & Jim Ramsay —— devtools::release() Have you checked for spelling errors (with `spell_check()`)? 1: Not yet 2: Nope 3: Absolu

Re: [R-pkg-devel] Used package not updated - needs java < V 11

2020-12-15 Thread Spencer Graves
d a huge number of reverse dependencies. The CRAN maintainers may have gotten someone to agree to take it over who just hasn't finished fixing whatever deficiencies it has. However, you might see how difficult it might be to do without "gdata" as well. Spencer Graves On

Re: [R-pkg-devel] Used package not updated - needs java < V 11

2020-12-17 Thread Spencer Graves
en someone to agree to take it over who just hasn't finished fixing whatever deficiencies it has.  However, you might see how difficult it might be to do without "gdata" as well.    Spencer Graves    Is it permissible to copy the code from rename.vars (gdata) inside my

Re: [R-pkg-devel] CRAN packages suggesting other packages but not using them conditionally

2020-12-12 Thread Spencer Graves
I have tests in my code to detect when something like that is not available. I also have code in "\examples" to skip tests that would encounter that. Hadley's "testthhat:skip_on_cran" is supposed to suppress tests like that on CRAN. I have so far failed to understand how to use

Re: [R-pkg-devel] CRAN packages suggesting other packages but not using them conditionally

2020-12-12 Thread Spencer Graves
On 2020-12-12 19:50, Duncan Murdoch wrote: On 12/12/2020 6:01 p.m., Ben Bolker wrote: On 12/12/20 5:50 PM, Duncan Murdoch wrote: On 12/12/2020 4:08 p.m., Spencer Graves wrote: Hi, Ben et al.: On 2020-12-12 13:43, Ben Bolker wrote:      Apologies if I'm telling you something you

Re: [R-pkg-devel] CRAN packages suggesting other packages but not using them conditionally

2020-12-12 Thread Spencer Graves
n no longer easily test. Spencer On 12/12/20 2:19 PM, Spencer Graves wrote:    I have tests in my code to detect when something like that is not available.    I also have code in "\examples" to skip tests that would encounter that.    Hadley's &quo

[R-pkg-devel] "--resave-data" doesn't work

2020-10-22 Thread Spencer Graves
;. This is AFTER I do "R CMD build Ecdat --resave-data". What do you suggest I do to get past this problem? Thanks, Spencer Graves p.s. My ".travis.yml" file ends with "r_build_args: --resave-data". I had trou

Re: [R-pkg-devel] How to communicate WARNINGS fixed from *last* CRAN version of a package

2021-06-22 Thread Spencer Graves
k() Hope this helps. Spencer Graves On 6/22/21 6:53 AM, Alberto Garre wrote: Thanks. I just "replied-to-all" again. Gmail then sends the email to cran-submissi...@r-project.org. Is this the correct address? El mar, 22 jun 2021 a las 12:38, Georgi Boshnakov (<

[R-pkg-devel] autotesting on GitHub with Travis or ...?

2021-05-13 Thread Spencer Graves
t;Run usethis::use_travis()".[1] However, 'help("use_travis", package="usethis")' says it's deprecated, but I don't understand what is recommended as an alternative. What do you suggest? Thanks, Spencer Graves [1] h

Re: [R-pkg-devel] autotesting on GitHub with Travis or ...?

2021-05-20 Thread Spencer Graves
t add" and "git commit" .github". * And when using "usethis::use_readme_rmd()", I initially missed the need to "knit" the file to produce the README.md. Spencer Graves On 5/13/21 7:04 PM, Ben Bolker wrote:   GitHub Actions   ?usethis::use_

Re: [R-pkg-devel] \donttest{} and writing outputs to tempdir()

2021-06-02 Thread Spencer Graves
You surely should be able to have some examples that would run in less than 5 seconds. I almost never use "donttest". Instead I use conditional skips, and those only on examples that I believe are likely to run too long. In those cases, I believe the standard recommendation is:

Re: [R-pkg-devel] Question about preventing CRAN package archival

2021-06-02 Thread Spencer Graves
The CRAN maintainers almost certainly have tried to contact the maintainer. You can ask if he plans to fix the bug. If not, if it's that easy to fix, you could offer to both the maintainers of both matrixcalc and CRAN to take over maintenance. Spencer On 6/2/21 2:41 PM, Roy

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-23 Thread Spencer Graves
ns, and I did some other searches without figuring out how to fix "`tikz.sty' not found." For more details, see: https://github.com/sbgraves237/sos Suggestions? Thanks, Spencer On 5/23/21 4:43 AM, Duncan Murdoch wrote: On 22/05/2021 10:05

[R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-22 Thread Spencer Graves
vi cannot proceed without one. The error message under Windows seemed crudely similar but different: * Error: processing vignette 'sos.Rnw' failed with diagnostics: pdflatex is not available What do you suggest? Th

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-23 Thread Spencer Graves
r you, but I think the 2nd line _R_CHECK_FORCE_SUGGESTS_: false may be more important:  you use ks, it imports plot3D, plot3D imports misc3d, but it only suggests rgl and tkrplot:  so that would let ks load without XQuartz support. Duncan Murdoch On 23/05/2021 3:09 p.m., Spencer Graves

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-23 Thread Spencer Graves
or: File `tikz.sty' not found."       )     shell: Rscript {0} Duncan Murdoch On 23/05/2021 11:28 a.m., Spencer Graves wrote: Hi, Duncan et al.:   Thanks very much to Duncan for his suggestion.  I did added the line Duncan suggested in three slightly different places.

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-23 Thread Spencer Graves
I really appreciate the help. Spencer On 5/23/21 4:44 PM, Duncan Murdoch wrote: I don't see where the connection is, but it's almost certainly coming in through your unconditional use of "fda::CRAN()".  Since "fda" is not a hard requirement, this should be conditio

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-25 Thread Spencer Graves
ry to understand it and fix it myself. However, I really don't understand the code, and you certainly did when you wrote it ;-) Thanks, Spencer Graves On 5/24/21 10:35 AM, Duncan Murdoch wrote: On 24/05/2021 10:17 a.m., Spencer Graves wrote: Hi, Duncan:   Thanks aga

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-24 Thread Spencer Graves
 if (requireNamespace("fda") && fda::CRAN()) I'd do number 1, or just assume everything is being run on CRAN. Duncan Murdoch On 23/05/2021 6:49 p.m., Spencer Graves wrote: Hi, Duncan et al.:   Thanks again.  I removed fda from "suggests" and added it to &quo

Re: [R-pkg-devel] Change package maintainer

2021-07-02 Thread Spencer Graves
I can suggest one example: multcompView: I created it during or before 2006 and passed it during or before 2011 to Luciano Selzer . I do not remember the exact process, and procedures could have changed since then. However, I think I remember communicating with the CRAN maintainers after

[R-pkg-devel] Warning in dir.create(vd2 <- "vign_test") : 'vign_test' already exists

2021-06-29 Thread Spencer Graves
at: https://github.com/sbgraves237/Ecfun This passed all 4 GitHub Actions, so maybe I should not worry about this. Comments? Thanks, Spencer Graves sessionInfo() R version 4.1.0 (2021-05-18) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: ma

Re: [R-pkg-devel] [External] Re: What is a "retired"package?

2021-09-22 Thread Spencer Graves
On 9/22/21 2:38 AM, Martin Maechler wrote: Lenth, Russell V on Tue, 21 Sep 2021 18:43:07 + writes: > As I suspected, and a good point. But please note that the term "retired" causes angst, and it may be good to change that to "superceded" or something else. well, some of us

[R-pkg-devel] doi confusion and Data codoc mismatches

2021-12-25 Thread Spencer Graves
t were, e.g., \url{https://doi.org/10.18128/D010.V8.0} I would try replacing it with \doi{10.18128/D010.V8.0}. However, if I do that, I don't know what to do with the "text to display to click to link to the doi url". Thanks, Spencer Graves _

[R-pkg-devel] doi confusion and Data codoc mismatches-confusing check

2021-12-26 Thread Spencer Graves
, whild clicking on "doi: 10.18128/D010.V8.0" takes me to that URL. This looks like a change to how *.Rd files are rendered that has appeared in the process on GitHub but not in my local computer. ??? Thanks, Spencer Graves > sessionInfo() R version

Re: [R-pkg-devel] doi confusion and Data codoc mismatches--AND THE VALUE OF GITHUB

2022-01-04 Thread Spencer Graves
in R 4.2.0 or maybe some 4.1.x release.  Thanks Kurt! Duncan Murdoch Duncan Murdoch On 26/12/2021 5:55 a.m., Duncan Murdoch wrote: On 26/12/2021 12:07 a.m., Spencer Graves wrote: Hello, All:   The latest checks on "https://github.com/sbgraves237/Ecdat/runs/4634725654?check_suite_

Re: [R-pkg-devel] URL syntax causes R CMD build failure - a fix

2023-09-02 Thread Spencer Graves
I've encountered similar issues. However, it has been long enough ago that I don't remember enough details to say more without trying to update my CRAN packages to see what messages I get and maybe researching my notes from previous problems of this nature. Spencer Graves On 9/2/23 4:23 PM

Re: [R-pkg-devel] Package bioOED has been removed from CRAN just for personal reasons

2023-11-02 Thread Spencer Graves
eemed less supportive or even insulting, I'm very glad the person took the time to comment and didn't decide not to reply for fear of offending me. I'm more productive and a better human for all the help I've gotten from this and other R-related lists. fortunes::fortune('Spencer Graves')

Re: [R-pkg-devel] Too many cores used in examples (not caused by data.table)

2023-10-24 Thread Spencer Graves
ot;a while" to run }) Have you tried writing directly to Jennifer Bryan ? She and Hadley might be able to get help from the CRAN maintainers in getting help with this particular problem AND getting more documentation on this in their book ;-) hope this helps. spen

Re: [R-pkg-devel] GitHub error

2022-04-20 Thread Spencer Graves
Hi, Andrew: Thanks. I think that was exactly what I needed: I was in particular unsure about "git push --force". Spencer Graves On 4/20/22 8:22 PM, Andrew Simmons wrote: Not really the place for this type of thing, but here's what I'd do: add .DS_Store to your .giti

Re: [R-pkg-devel] Rd cross-references ... NOTE, Undeclared packages ... in Rd xrefs

2022-06-13 Thread Spencer Graves
On 6/13/22 5:05 PM, Duncan Murdoch wrote: On 13/06/2022 5:11 p.m., Spencer Graves wrote: On 6/13/22 1:26 PM, Duncan Murdoch wrote: On 13/06/2022 12:12 p.m., Spencer Graves wrote: Hello, All:    How do I fix "Rd cross-references ... NOTE Undeclared packages ‘EnvStats’, ‘drc’,

[R-pkg-devel] NOTE: Escaped LaTeX specials: \$

2022-06-13 Thread Spencer Graves
could replace "\$1,000" with "1,000 US dollars", and "R\" could be replaced with "R and D". However, a dataset "Benefits" includes a column that is "a factor with levels (slack\_work,position\_abolished,seasonal\_job\_ended,other)".

Re: [R-pkg-devel] Rd cross-references ... NOTE, Undeclared packages ... in Rd xrefs

2022-06-13 Thread Spencer Graves
On 6/13/22 2:22 PM, Ivan Krylov wrote: On Mon, 13 Jun 2022 13:59:24 -0500 Spencer Graves wrote: I probably should have just used "Suggests" and not bothered this list with this issue. Why not use the \link{foo} form and let the HTML help system resolve the link a

Re: [R-pkg-devel] Warning... unable to translate 'Ekstrm' to a wide string; Error... input string 1 is invalid

2022-07-19 Thread Spencer Graves
Hi, Ivan et al.: On 7/19/22 1:03 PM, Ivan Krylov wrote: On Tue, 19 Jul 2022 12:32:20 -0500 Spencer Graves wrote: Can someone provide me with a link to the correct development version of help('iconv')? The current version includes the exact offending "\x" strings that I have. ht

[R-pkg-devel] Thanks -- success after 4 package submissions in 3 days

2022-07-23 Thread Spencer Graves
that are more easily fixed. Spencer Graves On 7/20/22 11:50 AM, Uwe Ligges wrote: Or simply read ?news which explains how the three formats (plain text NEWS, NEWS.Rd and NEWS.md) should look like. Best, Uwe Ligges On 20.07.2022 03:27, Max Turgeon wrote: Hi Spencer, This NOTE

[R-pkg-devel] Problems with news in ‘NEWS’

2022-10-12 Thread Spencer Graves
I haven't fixed NEWS. What do you suggest? Thanks, Spencer Graves Forwarded Message Subject:Ecdat 0.4-2: NOTE Date: Thu, 13 Oct 2022 00:55:10 + From: R-hub builder To: spencer.gra...@effectivedefense.org Ecdat 0.4-2: NOTE

Re: [R-pkg-devel] Problems with news in ‘NEWS’

2022-10-13 Thread Spencer Graves
On 10/13/22 4:34 AM, Ivan Krylov wrote: В Wed, 12 Oct 2022 20:16:20 -0500 Spencer Graves пишет: I copied NEWS to NEWS.md and tried to format it as described in: https://r-pkgs.org/other-markdown.html#news Sadly, I still get the same error. It seems to be ignoring my NEWS.md

Re: [R-pkg-devel] Misspelled words in descrition and tar.gz inside folder

2022-08-10 Thread Spencer Graves
ot;inst" folder. Below please find notes I've prepared for myself on the various tests I've gotten from their book, etc. The section numbers refer to an earlier version of this book. Ignore or use with caution. Hope this helps. Spencer Graves # File > &quo

[R-pkg-devel] Current recommendations re. GitHub Action?

2023-01-02 Thread Spencer Graves
I would happily rtfm if I only knew which fmtr. Thanks, Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] Current recommendations re. GitHub Action?

2023-01-02 Thread Spencer Graves
and macOS. However, Ubuntu failed with devel and oldrel1, complaining, "there is no package called ‘rcmdcheck’". See: https://github.com/sbgraves237/sos Suggestions? Thanks, Spencer Graves Hth, Dirk _

Re: [R-pkg-devel] Mysterious "invalid z limit"

2023-01-08 Thread Spencer Graves
part of my ignorance. Spencer Best,   Kevin On Sun, Jan 8, 2023, 11:30 AM Spencer Graves <mailto:spencer.gra...@effectivedefense.org>> wrote:           If you use GitHub, I highly recommend using "GitHub Action" as described by Wickham and Bryan, R

  1   2   >