You need to install XQuartz. This is IMO stated somewhat clearly at
https://cran.r-project.org/bin/macosx/
("somewhat", because - as always - it seems pretty clear when you know what
its trying to say)
Kasper
On Thu, Apr 4, 2024 at 9:13 AM Gregory via R-SIG-Mac <
r-sig-mac@r-project.org>
Rodney,
I don't know much about OpenMP and macOS, but note that these days
https://mac.r-project.org/tools/
says
"Additional information on the OpenMP page is available for those
interested in OpenMP support which is not supported by Apple, but still
possible with additional libraries."
and
I am not an expert, but it seems to me that switching the backend is a
runtime setting. Couldn't we detect which version of OS X we're running and
then select the backend conditionally on that test?
Best,
Kasper
On Wed, Jan 12, 2022 at 5:12 PM Jeroen Ooms wrote:
> On Wed, Jan 12, 2022 at 10:05
Out of curiosity, do we know if vecLib/Accelerate has been optimized for
M1?
On Sun, Oct 31, 2021 at 10:00 PM Kieran Healy wrote:
> Thanks, Simon.
>
> With the vecLib/Accelerate BLAS, the results are indeed rather faster :)
>
> Kieran
>
>
> 14” MacBook Pro / M1 Max
>
>R Benchmark 2.5
>
fic issue that's where should go if
> it is to be fixed.
>
> Cheers,
> Simon
>
>
> > On May 18, 2021, at 12:32 AM, Kasper Daniel Hansen <
> kasperdanielhan...@gmail.com> wrote:
> >
> > This bug is still present in the R-4.1.
> >
> > Best,
&
beleive I have reported this some time ago
> but no action was taken. Compiling R with R internal BLAS does not
> results in the error.
>
> Peter
> On Fri, Sep 28, 2018 at 10:52 AM Kasper Daniel Hansen
> wrote:
> >
> > I am trying to compile and install R under High Sierr
quartz is the graphics layer of OS X (
https://en.wikipedia.org/wiki/Quartz_(graphics_layer)). This is why the
"native" Apple device is called quartz() in R. This is a super nice device
IMO.
Xquartz is a port of X11 to quartz. To use XQuartz on OS X you have to use
the x11() device (or features
Greg,
Perhaps you're confused by the wording? It says "R compiled for High Sierra
OR HIGHER". This is a minimum OS version. It doesn't mean you need to run
High Sierra to use this binary.
Best,
Kasper
On Thu, Jan 14, 2021 at 8:32 PM Gregory Coats via R-SIG-Mac <
r-sig-mac@r-project.org> wrote:
Jean: _guessing_ this may be about parallel processing in BLAS? Does your
timing include linear algebra?
On Mon, Jan 11, 2021 at 2:38 PM Jean Thioulouse <
jean.thioulo...@univ-lyon1.fr> wrote:
> Hi
>
> Both versions seem to run fine indeed, but on my Mac mini M1, the arm
> version (homebrew R)
This line will essentially overwrite what RStan does for compilation. So
yes, this is potentially a bad thing.
On Mon, Nov 9, 2020 at 4:57 AM Goncalo Ferraz via R-SIG-Mac <
r-sig-mac@r-project.org> wrote:
> ok, found it! Makevars is where you said it would be and it contains only
> this line:
>
To use veclib you need
--with-blas="-framework Accelerate"
My full building script on OS X is currently
../${SRCDIR}/configure SHELL='/bin/bash' \
--prefix=/usr/local/R/${R_VERSION} --disable-R-framework\
CC="/usr/local/clang8/bin/clang" \
CXX="/usr/local/clang8/bin/clang++" \
In my understanding, almost all of the speed up comes from using an
optimized BLAS. Optimizing LAPACK tend to have negligible impact on
performance. At least that is my impression, although I won't say I'm an
expert.
Best,
Kasper
On Tue, Sep 29, 2020 at 9:53 AM roy wrote:
> Hi Simon,
> Thanks
Just a comment on the macos-rtools. It seems wrong to me to set the user
level ~/.R/Makevars.
On Sat, Dec 14, 2019 at 9:29 PM Manuel Spínola wrote:
> Thank you very much John.
>
> I restarted my computer, and everything looks fine now, I fitted a brms
> model without the error message.
>
>
Bob,
You ran the betas. On issues like this, that could be a big difference. So
Im not sure it is yet an issue that could be user dependent.
Best,
Kasper
On Tue, Oct 8, 2019 at 10:00 PM Bob Rudis wrote:
> I've been running Catalina since the first beta and upgraded to GM the day
> of release.
Thanks a lot for checking this so quickly.
I was alarmed by the label "beta 1", and frankly surprised that this got
pushed to my machine. I believe it is the first time system updated has
suggested a beta version for something on my laptop. I am wondering if this
could have been a mistake; it is
/Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg
> \
> > -target /
>
> -Roy
>
> > On Apr 24, 2019, at 8:36 AM, Kasper Daniel Hansen <
> kasperdanielhan...@gmail.com> wrote:
> >
> > I am on Mojave. I recently updated to Xcode 10.2.1 and I did t
I am on Mojave. I recently updated to Xcode 10.2.1 and I did the associated
update of the command line tools. Following this, I reinstalled clang6 and
gfortran 6 from CRAN.
When I use the clang6 compiler from CRAN, it is unable to find stdio.h.
When I compare the include path from clang6 to the
I am trying to compile and install R under High Sierra with Accelerate BLAS
but with R lapack.
My relevant configure call is --with-blas="-framework Accelerate" but
omitting --with-lapack. Full call is pasted at the end of this email
I can do
make
make check
but make install fails with
Thanks for the extremely helpful pointers on this. Clearly I need to
remove --with-lapack in my configure step.
On Sun, Sep 9, 2018 at 4:12 AM Prof Brian Ripley
wrote:
> On 08/09/2018 22:01, Kasper Daniel Hansen wrote:
> > For timing purposes, is it possible to control the number o
For timing purposes, is it possible to control the number of threads /
cores when I have compiled R to use the BLAS in the Accelerate framework
(by building R using
./configure --with-blas="-framework Accelerate" --with-lapack
)
? (The alternative is of course to build R using the supplied
Thanks. Nice to know it got fixed despite the somewhat pessimistic original
post.
Best,
Kasper
On Wed, Sep 27, 2017 at 4:32 AM, peter dalgaard <pda...@gmail.com> wrote:
>
> > On 27 Sep 2017, at 08:43 , Prof Brian Ripley <rip...@stats.ox.ac.uk>
> wrote:
> >
> >
I don't see this with
Xcode 9
OS X Sierra (10.12.6)
and either
R Under development (unstable) (2017-09-26 r73351) -- "Unsuffered
Consequences"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin16.7.0 (64-bit)
or
R version 3.4.2 RC (2017-09-26
Thanks for the work on this, especially the comment on xml2. I had noticed
problems with xml2 while compiling Emacs 25.1 using the new Xcode on El
Capitan, but I have not had time to track it down.
Best,
Kasper
On Thu, Sep 22, 2016 at 2:39 AM, Prof Brian Ripley
wrote:
>
On Sun, May 10, 2015 at 6:06 PM, Kasper Daniel Hansen
kasperdanielhan...@gmail.com wrote:
This is where you look for add-ons
http://r.research.att.com/libs
for OS X.
For texi2any I would install a new version of MacTex.
Finally, see the R-admin manual.
Best,
Kasper
I am self-compiling on Yosemite using the libraries provided by Simon. I
get quartz.
Best,
Kasper
On Fri, Oct 31, 2014 at 6:23 AM, peter dalgaard pda...@gmail.com wrote:
On 31 Oct 2014, at 10:24 , Colin A. Smith co...@colinsmith.org wrote:
This thread got a bit off the topics I was
On Thu, Jul 17, 2014 at 2:05 AM, Simon Urbanek simon.urba...@r-project.org
wrote:
On Jul 15, 2014, at 3:01 PM, Kasper Daniel Hansen
kasperdanielhan...@gmail.com wrote:
Prof Ripley and other people involved with tcltk,
You could have the tcltk building routine leave some evidence behind
Prof Ripley and other people involved with tcltk,
You could have the tcltk building routine leave some evidence behind re.
how it was build.
For example, in Rgraphviz we used to grapple with something similar at the
abstract level - was the Graphviz version used to build a binary
distributed
Do you use the same .emacs as before? This sounds like having to do with
fortification and the R buffer, and might be solvable by using
(setq comint-scroll-to-bottom-on-output 'others)
in your .emacs.
It would be strange if this is the source of your problem unless you're
using a new .emacs.
Have you set an alias or soft link somewhere? Try
which -a R
and look in your .bashrc / .profile.
Kasper
On Wed, Feb 12, 2014 at 7:39 AM, Catherine A. Lozupone
catherine.lozup...@colorado.edu wrote:
Hello,
I am on Mac OS X Version 10.8.5. I recently installed R-3.0.2.pkg on my
machine
I don't think your assumption that different systems will return the same
(accurate or inaccurate) answers is correct. I don't even think you can
assume that running the same code twice on the same system will give you
the same answers, although in practice it often will.
Kasper
On Sat, Nov
binary distribution?
Thank you again for all your help!
Cheers,
-Rob
On Oct 8, 2013, at 5:57 PM, Kasper Daniel Hansen
kasperdanielhan...@gmail.com wrote:
Rob,
What you should do, is _always_ inherit the compiler which was used to
build R. That is the 'Right' way to go and it is what
Rob,
What you should do, is _always_ inherit the compiler which was used to
build R. That is the 'Right' way to go and it is what will happen per
default if you are using Makevars to compile you package. If you need to
use configure, there are hints in R-exts and we can help more specifically,
The advantages are very minor (although I do source compilation myself).
To Prof Ripley's list I will add that I personally like to know I can
compile from source for packages that I depend on in package development,
so I can trace down bugs and run R CMD check - but this is a very, very
minor
For those of us who compile from source, I assume this
tcl8.6.0-darwin10-x86_64.tar.gz
from
http://r.research.att.com/libs/
is the recommend version? Indeed, I always assume I should just grab the
newest version of everything I need from this location.
Best,
Kasper
On Tue, Sep 3, 2013 at
Setting
DYLD_FALLBACK_LIBRARY_PATH
is super dangerous and I would be highly suspicious of whoever told you to
do that (in the sense that they don't really know how this works) It has
the potential to really wreck your system. Especially if you set it in
such a way that all GUI apps inherit
Rohmatul,
Check by doing
R CMD build pkgName
R CMD check pkgName_X_Y_Z.tar.gz
The building step excludes many common files, and is recommended.
Kasper
On Tue, Aug 6, 2013 at 3:43 AM, Prof Brian Ripley rip...@stats.ox.ac.ukwrote:
On 06/08/2013 08:41, Rohmatul Fajriyah wrote:
Dear Prof.
I have heard rumors of GCC 4.7.2, has this been abandoned?
Kasper
On Wed, Mar 20, 2013 at 5:23 AM, Prof Brian Ripley
rip...@stats.ox.ac.uk wrote:
R 3.0.0 is due to be released on Apr 3, and is now in beta. Simon is
travelling but before he left put up a binary distribution at
Prof Ripley,
I highly appreciated the clarifications in this thread. I am sure I
am not the only one.
Good luck with finding a new compiler; I am happy to provide whatever
help I can.
Best,
Kasper
On Wed, Mar 20, 2013 at 1:08 PM, Marc Schwartz marc_schwa...@me.com wrote:
Prof Ripley,
A
On Fri, Sep 28, 2012 at 10:58 AM, Prof Brian Ripley
rip...@stats.ox.ac.uk wrote:
On 28/09/2012 15:29, Kasper Daniel Hansen wrote:
So I had a few emails with Peder, and I think he gets it now.
However, one point came up which I have been wondering about as well.
In Makeconf R only stores
On Thu, Sep 27, 2012 at 10:07 AM, Peder Axensten peder.axens...@slu.se wrote:
On 27 sep 2012, at 14:27, Simon Urbanek simon.urba...@r-project.org wrote:
On Sep 27, 2012, at 5:02 AM, Peder Axensten wrote:
The compiler (clang) and linker that Apple includes (with Xcode) uses the
argument
, and it has much nicer ttk widgets.
On 02/09/2012 19:21, Kasper Daniel Hansen wrote:
I now want to get tcltk support working under ML (because I need to
test a few packages).
I have installed Xquartz and I have just install the new tcltk 8.5.5
from CRAN (which is not signed btw).
Running
I am running Lion, with the newest version of Xcode, and the 5666
build of gcc+gfortran from Simon's page. This is on Macbook pro last
generation, with a quad core i7. I have installed the latest stable
release of Xquartz.
I am building R, not as a framework (--disable-framework), but I am
Paul,
The standard way to install Tex on the Mac is to use MacTex (a port of
Texlive to the Mac), see
http://tug.org/mactex/
You should probably install the big 2.1GB package on the front page.
That should also place the tex utilities on your path (as far as I
recall).
Kasper
On Sun, Aug 19,
On Thu, Jul 5, 2012 at 9:42 AM, David Winsemius dwinsem...@comcast.net wrote:
On Jul 4, 2012, at 11:47 PM, Richard M. Heiberger wrote:
David,
thank you. it works.
Where is it documented?
The first place I find written documentation of the cmd-arrow
functions is in the R MacOSX FAQ:
For what it is worth I don't see this problem on Snow Leopard, self-compiled.
You can make quartz the default device by putting
Sys.setenv(R_INTERACTIVE_DEVICE = quartz)
in your .Rprofile.
Kasper
On Fri, Jan 27, 2012 at 7:17 PM, Martin Renner greatauk...@gmail.com wrote:
Hi All,
Is anybody
On Mon, Jan 16, 2012 at 2:57 AM, BEES INC bees@gmail.com wrote:
Hey there
I am having a bit of trouble getting this working, I had to do a bit
of fiddling with makefiles to get it to find the right gfortran, but
it builds links without error, however the install gives the
following
the same error. Can you build the package OK?
Thanks
On Tue, Jan 17, 2012 at 1:16 AM, Kasper Daniel Hansen
kasperdanielhan...@gmail.com wrote:
On Mon, Jan 16, 2012 at 2:57 AM, BEES INC bees@gmail.com wrote:
Hey there
I am having a bit of trouble getting this working, I had to do a bit
This is not the appropriate email list for this question, but I can
tell you that L means integer.
Kasper
On Tue, Nov 22, 2011 at 9:16 PM, Colstat cols...@gmail.com wrote:
Hi, all
When you enter 3L or 10L in R console, it still returns the number 3, 10,
respectively. It's amazing that
I am on Snow Leopard. As Brian mentions, my DISPLAY variable is set
(to echo $DISPLAY
/tmp/launch-SN2m7Z/org.x:0
), but this is not something I do myself. I have always thought that
on (newer) OS X, DISPLAY got set automatically. Not too infrequently
do I use X11 on a remote server and I always
On Sat, Sep 3, 2011 at 12:47 PM, Duncan Murdoch
murdoch.dun...@gmail.com wrote:
With a current R-patched (2.13.1 Patched (2011-09-02 r56906)), the following
code generates plots missing the bottom labels:
par(mfrow = c(4, 5), mar = c(2.1, 2.1, 4.1, 1.1))
for (i in 1:20) plot(1)
If I resize
.Library.site becomes not empty when you create a site library, for example by
mkdir {PATH to R}/R/lib64/site-library
(of course lib64 assumes a 64 bit architecture)
Kasper
On Wed, May 25, 2011 at 6:51 AM, Sean Davis sdav...@mail.nih.gov wrote:
See help(.Library).
Sean
On Wed, May 25,
You can have packages two places
(1) system wide
(2) user specific
The packages that ship with R always install system wide which is why
- when you look in your user specific packages - you don't see any.
You need to reinstall the packages for 2.13. You cannot just copy the
directories. You
On Sun, Apr 17, 2011 at 7:16 PM, John Fox j...@mcmaster.ca wrote:
Dear Kaspar,
-Original Message-
From: Kasper Daniel Hansen [mailto:kasperdanielhan...@gmail.com]
Sent: April-17-11 5:59 PM
To: John Fox
Cc: Prof Brian Ripley; r-sig-mac@r-project.org
Subject: Re: [R-SIG-Mac] problem
This _may_ be unrelated to a corrupt font cache. Note that the OP
says the issue is fixed by resizing the quartz screen.
To see this in action (explanation below) I have posted
http://www.biostat.jhsph.edu/~khansen/screen1.png
(the initial look of the quartz window)
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