I just bought a Mac and am learning it.
I have a package which R CMD checks normally on a PC and in Mac mode on
the new Mac.
Under Windows in Parallels on the Mac, I am getting a message I don't
understand.
* checking data for ASCII and uncompressed saves ... WARNING
Error in xzfile(file, wb,
and then Windows could display the pdf files.
I will look at the file extensions map now for lzma. Should you get back
to me before I find it, I would be very happy.
Rich
On Fri, Jun 8, 2012 at 4:53 PM, David Winsemius dwinsem...@comcast.netwrote:
On Jun 8, 2012, at 4:21 PM, Richard M. Heiberger wrote
Yes,
.q .r .rcommand .rd .rda .rds
are sent to R (Mac).
.rdata ggoes to R for Windows GUI front end.
I will experiment with the right target for the others.
On Fri, Jun 8, 2012 at 5:03 PM, Richard M. Heiberger r...@temple.edu wrote:
David,
that makes sense to me. How do I respond
I just changed all 6 to
C:\Program Files\R\R-2.15.0\bin\i386\Rgui.exe which
displays as R for Windows Gui front-end
Doing that did not solve this problem.
I guess the next step is reading the scripts in Rtools.
On Fri, Jun 8, 2012 at 5:05 PM, Richard M. Heiberger r...@temple.edu wrote:
Yes,
.q
that noone else has attempted to build a package on the windows
side of a parallels windows on a mac?
On Fri, Jun 8, 2012 at 5:56 PM, David Winsemius dwinsem...@comcast.netwrote:
On Jun 8, 2012, at 5:16 PM, Richard M. Heiberger wrote:
I just changed all 6 to
C:\Program Files\R\R-2.15.0\bin\i386
environment: namespace:base
is the next step, but not today.
On Fri, Jun 8, 2012 at 6:09 PM, Richard M. Heiberger r...@temple.edu wrote:
I am using exactly the same Rtools etc on both the real Windows machine
and the Parallels version on the Mac.
FOllowigin your hint I am sure the problem is a file
suspended
didn't do it.
On Fri, Jun 8, 2012 at 6:36 PM, Richard M. Heiberger r...@temple.edu wrote:
cygwin has bin/xz
the mac doesnt have xz in its /bin
I won't follow through today. reading the r code
for
Browse[1] xzfile
function (description, open = , encoding = getOption(encoding
:35 PM, David Winsemius dwinsem...@comcast.netwrote:
On Jul 4, 2012, at 11:12 PM, Richard M. Heiberger wrote:
The windows feature I miss most on the Mac is a graphics device that
remembers the previous graphs,
specifically
windows.options(record=TRUE) ## R for Windows
Is there a similar
on windows, click on a tab to get to a specific graph, or click
on a tab and delete
a specific graph.
On Thu, Jul 5, 2012 at 10:01 AM, Simon Urbanek
simon.urba...@r-project.orgwrote:
On Jul 5, 2012, at 9:42 AM, David Winsemius wrote:
On Jul 4, 2012, at 11:47 PM, Richard M. Heiberger wrote
/doc
to point to /Applications/R.app/Contents/Resources?
That will make it easier for the next person converting from windows to mac.
Thanks
Rich
On Thu, Jul 5, 2012 at 11:59 AM, David Winsemius dwinsem...@comcast.netwrote:
On Jul 5, 2012, at 10:58 AM, Richard M. Heiberger wrote
R runs in emacs on the mac. I use
GNU Emacs 23.4.1 (x86_64-apple-darwin, NS apple-appkit-1038.36) of
2012-01-29 on bob.porkrind.org
with Vincent Goulet's distribution. M-x R works.
On Fri, Oct 19, 2012 at 5:28 PM, Paul Hewson paul.hew...@plymouth.ac.ukwrote:
typing R in the console gets the
mylegend -
structure(list(bottom = structure(list(fun = draw.key, args =
structure(list(
key = structure(list(y = -0.2, x = 0.15, points = structure(list(
col = c(red, blue), pch = c(16, 17)), .Names = c(col,
pch)), text = structure(list(c(TREATMENT A (N=216), TREATMENT B
(N=431)
I think this is a quartz problem interacting with emacs/ESS. When I run the
following lines in the *R* buffer,
## --
library(grid)
library(lattice)
library(png)
Rlogo.png -
readPNG(/Library/Frameworks/R.framework/Versions/2.15/Resources/library/png/img/Rlogo.png,
TRUE)
Rlogo.grob -
one of my students just download mac mavericks.
starting with the new system, R-3.0.1 in the APP is misbehaving.
enter
TRUE - FALSE
(to illustrate why use of T is not a good practice)
R app gives the error message
invalid (do_set) left-hand side to assignment
*** caught segfault ***
address
of course you never use it. it won't work.
the point of the email is that writing an invalid statement should
trigger only an error message. It should not trigger the segfault.
It looks like the segfault is specific to 3.0.1 since your and Marc both report
that you don't see the segfault on
May 6 15:08:33 rmhs-MacBook-Air.local R[21671] Error:
CGContextSetFont: invalid context 0x10064d430. This is a serious
error. This application, or a library it uses, is using an invalid
context and is thereby contributing to an overall degradation of
system stability and reliability. This notice
I can consistently get a segfault from Mavericks 3.1 and I suspect it
is from a mismatch
of compiled code. Can this type of mismatch be detected when the
package is loaded?
When I moved to the Mavericks R distribution, I copied packages from
my 3.0 (SnowLeopard) library and then did an
R Commander menus are sensitive to the currently active data.frame.
My guess is that you didn't declare that. Do so on the R Commander
menu with item
Data set:
Also be sure to read the Introduction to the R Commander on the
Rcmdr Help menu item.
On Fri, Aug 1, 2014 at 11:35 AM, Grant Rettke
John,
I have noticed what I think is a related issue. I normally run R
under emacs with ESS.
help files open an emacs buffer. When I run Rcmdr on the Mac, then
Rcmdr changes the help
file location to something on the Mac. It restores the emacs buffer
destination when I close Rcmdr.
Is there,
matrixcalc to the Suggests list might be the
missing item
that will allow building on R-Forge.
Rich
On Wed, Aug 13, 2014 at 3:08 PM, John Fox j...@mcmaster.ca wrote:
Dear Rich,
-Original Message-
From: Richard M. Heiberger [mailto:r...@temple.edu]
Sent: Wednesday, August 13, 2014 1:30 PM
Rcmdr with unload=TRUE and help files went back to an emacs buffer.
Please suggest something else for me to try.
Rich
On Wed, Aug 13, 2014 at 8:33 PM, Richard M. Heiberger r...@temple.edu wrote:
I have a hypothesis why R-Forge might be having trouble.
This is the first time I used Rcmdr
Sep 19 16:37:16 rmhs-air.home R[15381] Error:
CGContextDelegateCreateForContext: invalid context 0x7fe3bb796370.
This is a serious error. This application, or a library it uses, is
using an invalid context and is thereby contributing to an overall
degradation of system stability and reliability.
I just did a workshop for new R users. the only serious installation problem I
saw was Macintosh users and tctlk. From this discussion, I knew to tell both
people they needed to download quartz.macosforge.org
and indeed that solved it.
Is there a place on the package DESCRIPTION file to state
Its Applications, Room 1194,
John Dedman Mathematical Sciences Building (Building 27)
Australian National University, Canberra ACT 0200.
On 28 Oct 2014, at 15:03, Richard M. Heiberger r...@temple.edu wrote:
I just did a workshop for new R users. the only serious installation
problem I
This has been reported before. I am still seeing it with R-3.2.3.
It appears randomly. It sounds scary.
Rich
>
Dec 17 15:14:01 rmhs-MacBook-Air.local R[3534] :
CGContextSetFont: invalid context 0x7fb698259080. This is a serious
error. This application, or a library it uses, is using an invalid
:23 PM, Erich Neuwirth
<erich.neuwi...@univie.ac.at> wrote:
> Do you have any idea under what circumstances this happens.
>
>
>> On Dec 17, 2015, at 21:44, Richard M. Heiberger <r...@temple.edu> wrote:
>>
>> This has been reported before. I am still seeing
bash-3.2$ R --vanilla
R version 3.4.0 Patched (2017-04-28 r72639) -- "You Stupid Darkness"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under
sI have Macintosh High Sierra 10.13.4
and R_3.5.0
I am attempting to R CMD build and check my package microplot against
the imminent ggplot2_2.2.1.9000
The build fails with messages
** byte-compile and prepare package for lazy loading
Error : .onLoad failed in loadNamespace() for 'rJava',
rJava 0.9-10 since it works around some issue
> with Java on macOS and with Java 10.
>
> Cheers,
> Simon
>
>
>
>
>
>> On May 23, 2018, at 7:50 PM, David Winsemius <dwinsem...@comcast.net> wrote:
>>
>>
>>
>>> On May 22, 2018, at
ibXplugin is there. Mine is "XQuartz
> 2.7.11 (xorg-server 1.18.4)".
>
> Duncan Murdoch
>
>
>
> On 29/05/2020 11:44 a.m., Richard M. Heiberger wrote:
> > R version 4.0.0 (2020-04-24) -- "Arbor Day"
> > Copyright (C) 2020 The R Foundation for Statis
R version 4.0.0 (2020-04-24) -- "Arbor Day"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or
for dev.cur()?
On Fri, May 29, 2020 at 1:51 PM Duncan Murdoch wrote:
>
> On 29/05/2020 12:35 p.m., Richard M. Heiberger wrote:
> > I have the same Xquartz as you.
>
> I'd guess it should be updated. Generally XQuartz needs updates with
> every MacOS release, and your 10.15.4 is two r
this prevents the crash
> rgl.quit()
> plot(1:10)
>
On Fri, May 29, 2020 at 12:35 PM Richard M. Heiberger wrote:
>
> I have the same Xquartz as you.
> I have rgl-0.100.50 from CRAN
> Apple is macOS Catalina, Version 10.15.4
> Do you need hardware information?
> MacB
My reproducible issue looked resolved (as I posted) when I upgraded to
10.15.5.
Today I found another issue, but not repeatable so I haven't
posted it yet. this is the headline:
> car::scatter3d(RRS ~ CCS + JCS,
+data=RespJ$variables,
+surface=FALSE,
please send to the list the output from both:
dput(head(P2))
utils::sessionInfo()
This is the Macintosh list. Is this specifically a Macintosh problem?
On Sun, Dec 13, 2020 at 6:32 PM John Helly via R-SIG-Mac <
r-sig-mac@r-project.org> wrote:
> Aloha.
>
> For the past few weeks, maybe 6 or
month.factor <- factor(month.name, month.name)
> month.name
[1] "January" "February" "March" "April" "May" "June"
[7] "July" "August""September" "October" "November" "December"
> class(month.name)
[1] "character"
> month.factor <- factor(month.name, month.name)
>
I am not seeing tcltk in either the released R
R version 4.1.0 (2021-05-18) -- "Camp Pontanezen"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20 (64-bit)
or the nightly
R version 4.1.0 Patched (2021-05-23 r80364) -- "Camp Pontanezen"
Copyright (C)
Rodney,
thank you.
I did that and it installed stuff, and now
library(tcltk)
or
library(Rcmdr)
work normally.
Simon, can you change the warning message about xcrun to a suggestion to run
from the terminal
xcode-select --install
Rich
> On May 26, 2021, at 09:50, Sparapani, Rodney wrote:
>
what you say sounds right, but I need more specifics. I tried to run git from
Emacs *shell* and get this
rmh@MacBook-Air ~ % git
git
xcrun: error: invalid active developer path
(/Library/Developer/CommandLineTools), missing xcrun at:
/Library/Developer/CommandLineTools/usr/bin/xcrun
add a note to the CRAN download page that XQuartz 2.8.1 is
needed for the Mac M1.
Rich
> On May 25, 2021, at 01:36, Simon Urbanek wrote:
>
> Rich,
> you need to instal XQuartz (see instructions on the CRAN page).
> Cheers,
> Simon
>
>
>
>> On 25/05/2021, a
gt;
> As for XQuartz, we already do say that explicitly on the CRAN page (with a
> link to XQuartz 2.8.1):
> "Note: the use of X11 (including tcltk) requires XQuartz. Always re-install
> XQuartz when upgrading your macOS to a new major version."
>
> Cheers,
>
and
allows pagination. XQuartz is very slow, you can watch it draw each panel, and
each bar in a bar graph.
XQuartz does not have pagination.
From: Prof Brian Ripley
Sent: Tuesday, February 9, 2021 1:26 PM
To: Richard M. Heiberger; Peter West; r-sig-mac@r
n my older intel mac. same behavior. the Xquartz.app menu
doesn't list
the R graphics window, and the R graphics shows "...", not "XQuartz" in the
menu bar.
From: R-SIG-Mac on behalf of Richard M.
Heiberger
Sent: Tuesday, February 9
When I draw a 9x7 panel lattice it displays 12 panels, then sits there until I
resize the window. then the rest appears. When I display another 9x7, it too
sits at 12 panels.
When I Cmd-left for the previous display, the current one vanishes entirely.
When I send the command again, after it
-h...@r-project.org
____
From: Parkhurst, David F.
Sent: Tuesday, February 2, 2021 4:29 PM
To: Richard M. Heiberger
Subject: Re: Question about stripchart
Hmm. I’m guessing that this might work with my stripchart problem:
Define
months<-c("Jan&q
ng obvious in common.
Rich
From: Bob Rudis
Sent: Sunday, March 7, 2021 14:37
To: Richard M. Heiberger
Cc: r-sig-mac@r-project.org
Subject: [External] Re: [R-SIG-Mac] Mac M1 emacs
you should likely re-post to the list or double check the download as
there are
s
provided. The file structure isn't identical, so that won't work naively.
Now to see if I prefer the mouse-accesible x86_64 with random crashes or the
aarch64 (presumably more stable) without mouse ability.
From: R-SIG-Mac on behalf of Richard M.
Heibe
it claims to be damaged.
I sent a copy of this screenshot a few minutes ago and
it was >156KB and held for moderation, this copy is 32KB.
From: Simon Urbanek
Sent: Sunday, March 7, 2021 21:42
To: Richard M. Heiberger
Cc: r-sig-mac@r-project.org
Subj
;
problem each time.
From: Simon Urbanek
Sent: Sunday, March 7, 2021 23:52
To: Richard M. Heiberger
Cc: r-sig-mac@r-project.org
Subject: Re: [External] Re: [R-SIG-Mac] [External] Re: Mac M1 emacs
Did you try running it from the image? At which point does it complain? It
works for me.
Note that ma
on behalf of Richard M.
Heiberger
Sent: Monday, March 8, 2021 11:55
To: Simon Urbanek
Cc: r-sig-mac@r-project.org
Subject: Re: [R-SIG-Mac] [External] Re: [External] Re: Mac M1 emacs
I tried the all-purpose computer repair and rebooted the machine. It still
reports a damaged app.
I am now ooking
I tried the all-purpose computer repair and rebooted the machine. It still
reports a damaged app.
I am now ooking at
https://osxdaily.com/2019/02/13/fix-app-damaged-cant-be-opened-trash-error-mac/
and wi report back.
From: Richard M. Heiberger
Sent
PSE_NOTIFY
From: Prof Brian Ripley
Sent: Monday, March 8, 2021 13:30
To: Richard M. Heiberger; Simon Urbanek
Cc: r-sig-mac@r-project.org
Subject: [External] Re: [R-SIG-Mac] [External] Re: [External] Re: Mac M1 emacs
On 08/03/2021 17:59, Richard M. Heiberger wrote:
> I u
.
From: Simon Urbanek
Sent: Sunday, March 7, 2021 21:42
To: Richard M. Heiberger
Cc: r-sig-mac@r-project.org
Subject: [External] Re: [R-SIG-Mac] [External] Re: Mac M1 emacs
Richard,
please note the binary supports mouse integration if you enable it (see Emacs
ran Emacs from there.
From: R-SIG-Mac on behalf of Richard M.
Heiberger
Sent: Monday, March 8, 2021 14:19
To: Prof Brian Ripley; Simon Urbanek
Cc: r-sig-mac@r-project.org
Subject: Re: [R-SIG-Mac] [External] Re: [External] Re: [External] Re: Mac M1
emac
I originally asked this question on the ess-help list, I now think it belongs
here.
emacs 21.1, specifically Vincent Goulet's distribution, crashes regularly on my
Mac M1.
It looks to me like it is using the intel compilation through rosetta instead
of the arm
compilation.
Vincent's
This is repeatable when the lines are all pasted in at once.
The example works if I allow some time delay between lines.
This is might be a relative of the one from a few months ago.
But this message is about invalid permissions.
=
R version 4.0.4 RC (2021-02-12 r79998) -- "Lost Library
Using the intel R_4.0.4RC on the Mac M1.
Based on your recommendation I reinstalled XQuartz 2.7.11 instead of the
8.0.3beta.
X11() now does not work at all.
> X11()
xcrun: error: invalid active developer path
(/Library/Developer/CommandLineTools), missing xcrun at:
Thank you for 4.0.4 RC.
I am running on Mac M1 using the intel R_4.0.4RC
The inappropriate quartz() behavior I reported on "[R-SIG-Mac] Behaviour or
Quartz windows"
on Tuesday, February 9, 2021 11:56 AM has been repaired.
The entire set of lattice panels are printed on screen. CMD-left and
I am running it now on 4.0.4RC.
The cran page
https://cran.r-project.org
offers download of 4.0.3 for mac, even though 4.0.4 is available on windows.
From: Duncan Murdoch
Sent: Saturday, February 20, 2021 9:41 AM
To: Richard M. Heiberger; r-sig-mac@r
)
>
>
>
>
>
>
> library(rgl)
> plot(1:10, col=7)
> open3d()
glX
1
From: R-SIG-Mac on behalf of Richard M.
Heiberger
Sent: Saturday, February 20, 2021 10:45 AM
To: Duncan Murdoch; r-sig-mac@r-project.org
Subject: Re: [R-SIG-Mac] [External] Re: more
yes it is there. when you click the cran main page fir windows or mac, the mac
is 4.0.3
Get Outlook for iOS<https://aka.ms/o0ukef>
From: John Fox
Sent: Saturday, February 20, 2021 12:38:11 PM
To: Richard M. Heiberger ; Duncan Murdoch
; r-sig-mac@r-proje
ERROR: can't bind glx context to window
Process R finished at Thu Feb 18 17:57:37 2021
From: Duncan Murdoch
Sent: Thursday, February 18, 2021 3:20 PM
To: Richard M. Heiberger; r-sig-mac@r-project.org
Subject: [External] Re: more rgl problems
I
d M. Heiberger
Cc: e...@lisse.na
Subject: [External] Re: [R-SIG-Mac] [External] Please test R 4.0.4 RC
that has nothing to do with Xquartz but means you need to install the Command
line tools
sudo xcode-select —install
—
Sent from Dr Lisse’s iPhone
On 13 Feb 2021, 06:13 +0200, Richard M. Heiberger , wr
_
From: Duncan Murdoch
Sent: Saturday, February 13, 2021 4:05 PM
To: Richard M. Heiberger; R-SIG-Mac
Subject: [External] Re: [R-SIG-Mac] [External] Re: [External] Please test R
4.0.4 RC
Have you tried the change to DISPLAY, i.e.
Sys.setenv(DISPLAY=":0.0")
before ru
nable to open connection to X11 display ':0'
>
From: Simon Urbanek
Sent: Saturday, February 13, 2021 4:54 PM
To: Richard M. Heiberger
Cc: Dr Eberhard W Lisse; R-SIG-Mac
Subject: Re: [External] Re: [R-SIG-Mac] [External] Please test R 4.0.4 RC
As mentioned earlier, the issue is likely that your
ges to the Xquartz. I previously had the beta and
replaced it with 2.7.11, so I just continued from there.
________
From: Duncan Murdoch
Sent: Saturday, February 13, 2021 4:55 PM
To: Richard M. Heiberger; R-SIG-Mac
Subject: Re: [External] Re: [R-SIG-Mac] [External
achine, and specifically not in
/Library/Developer/CommandLineTools/
From: Dr Eberhard W Lisse
Sent: Saturday, February 13, 2021 6:50 PM
To: Duncan Murdoch; R-SIG-Mac; Richard M. Heiberger
Cc: e...@lisse.na
Subject: Re: [External] Re: [R-SIG-Mac] [External] Re: [External] Re:
[Ext
ore importantly your XQuartz doesn't work - or at least is not running at
the time you are trying to run X11() in R. Make sure you start XQuartz first
(from Applications -> Utilities) and it works. If in doubt, you can wipe it (it
lives in /opt/X11) and re-install.
Either way, neither s
; Richard M. Heiberger
Cc: e...@lisse.na
Subject: [External] Re: [R-SIG-Mac] [External] Re: [External] Re: [External]
Please test R 4.0.4 RC
the Xcode Command line tools are missing. Install them and see what happens.
Did you recently upgrade MacOS?
el
—
Sent from Dr Lisse’s iPhone
On 13 Feb
Thank you. dragging the org.xquartz.startx.* to Trash and reinstalling 2.7.11
restored my system to sanity.
From: Duncan Murdoch
Sent: Saturday, February 13, 2021 8:42 PM
To: Richard M. Heiberger; R-SIG-Mac
Subject: Re: [External] Re: [R-SIG-Mac
I confirm the error on Mac M1
R version 4.0.4 RC (2021-02-12 r79998) -- "Lost Library Book"
I also ran it on an intel Mac with R 4.0.3
and it worked correctly there.
From: R-SIG-Mac on behalf of Zhang, Jialin
via R-SIG-Mac
Sent: Monday, February 22,
R version 4.1.1 Patched (2021-08-13 r80752)
aarch64-apple-darwin20
> library(rgl)
Error in dyn.load(dynlib <- getDynlib(dir)) :
unable to load shared object
'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/rgl/libs/rgl.so':
Works normally in R-4.1.2 with Rmpfr_0.8-7 on Macintosh aarch64-apple-darwin20
I am running inside Emacs using ESS
> packageVersion("Rmpfr")
[1] ‘0.8.7’
> library(Rmpfr)
Loading required package: gmp
Attaching package: ‘gmp’
The following objects are masked from ‘package:base’:
%*%, apply,
start.
> On Nov 28, 2021, at 12:53, Richard M. Heiberger wrote:
>
> Works normally in R-4.1.2 with Rmpfr_0.8-7 on Macintosh aarch64-apple-darwin20
> I am running inside Emacs using ESS
>
>> packageVersion("Rmpfr")
> [1] ‘0.8.7’
>> library(Rmpfr)
> L
works normally on Mac M1.
> On Nov 29, 2021, at 00:43, Kevin Ushey wrote:
>
> library(Rmpfr)
> x <- mpfr(-50.1, 200)
> str(x)
>
___
R-SIG-Mac mailing list
R-SIG-Mac@r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
etails, the exact way you run R, code to reproduce and
> where it hangs, ideally with a crash report (which macOS creates on hangs as
> well).
>
> Cheers,
> Simon
>
>
>> On 3/06/2022, at 2:51 PM, Richard M. Heiberger wrote:
>>
>> it makes R unrespons
te loop in your fonts. No
> idea how that can happen, possibly recursive symlink in your font directory?
>
> Cheers.
> Simon
>
>
>> On Jun 7, 2022, at 2:12 AM, Richard M. Heiberger wrote:
>>
>> i think i will bring it to apple this afternoon
Have you considered ps2pdf?
> On Oct 26, 2022, at 10:11, Marc Schwartz via R-SIG-Mac
> wrote:
>
> Hi Prof. Ripley,
>
> Thanks for your reply. Responses inline below.
>
> On October 25, 2022 at 11:11:43 PM, Prof Brian Ripley (rip...@stats.ox.ac.uk)
> wrote:
>> Somehow you sent HTML only, and
I also tried opening quartz(), then X11(), then I plotted on X(11) it worked
> normally,
> Then I dev.set() back to the quartz. When I plot(1:10) it locks up.
> So it is not the existence of the quartz device, it is the attempt to use it
> that causes the freeze.
> Rich
> From
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