Re: [R-SIG-Mac] odd problem building gmp from source

2011-01-11 Thread Simon Urbanek
On Jan 11, 2011, at 6:06 PM, Carl Witthoft wrote: Hi, I chose to make a minor edit to the R-source matrixz.R in the gmp package (not to be confused with the GNU gmp library which it calls). On my Intel iMac at work, running OSX 10.6.4, it compiled just fine. for reference, that Mac

Re: [R-SIG-Mac] unrecognized command line option -arch

2011-01-27 Thread Simon Urbanek
On Jan 20, 2011, at 3:44 PM, Matt Pocernich wrote: Hello, Up until 30 minutes ago, I have been able to install the following package. Perhaps while playing with the install.package( ) command and trying to install a built package - I did something. I am running 2.12 on an iMac with

Re: [R-SIG-Mac] Probleme with libpng

2011-04-05 Thread Simon Urbanek
On Apr 5, 2011, at 9:49 AM, Guillaume Meurice wrote: Dear Simon, I have downloaded the binaries for mac os X : Cairo_1.4-8.tgz and tried to install the package locally. (by sourcing local package). During startup - Warning messages: 1: Setting LC_CTYPE failed, using C 2: Setting

[R-SIG-Mac] Call to test current R 2.13.0 beta and RCs - especially new GUI features!

2011-04-05 Thread Simon Urbanek
It's the time of the year to test the new upcoming R release, but this time I'd like to ask as many users as possible to give the new R a spin, because there are many new features in the Mac GUI which increases the likelihood of bugs. It can be downloaded, as usual, from

Re: [R-SIG-Mac] Which gcc version on mac os?

2011-04-10 Thread Simon Urbanek
On Apr 10, 2011, at 5:41 AM, Christophe Dutang wrote: Yes I'm using Xcode 3.2.6. So you advise me to use Xcode 3.2.5 with gcc build 5664 ? It is not related to your problem but essentially it is safe to use 5664 gfortran with both gcc 5664 and gcc 5666 because the only change between 5664

Re: [R-SIG-Mac] biOps and fftw3

2011-04-12 Thread Simon Urbanek
On Apr 12, 2011, at 5:49 PM, Carl Witthoft wrote: I have successfully installed biOps, at least in the sense that the package loads and many of the functions work. The question I have now is how to get biOps to recognize fftw3 during compilation. I installed fftw3 from a Terminal

Re: [R-SIG-Mac] Lion/clang

2011-04-18 Thread Simon Urbanek
found with clang so far is with Armadillo (Rcpp is fine). On Apr 18, 2011, at 09:48 , Steve Lianoglou wrote: That's great news, actually. Thanks for sharing! -steve On Mon, Apr 18, 2011 at 12:39 PM, Simon Urbanek simon.urba...@r-project.org wrote: Yep. The only issue I had with Lion

Re: [R-SIG-Mac] Installing Multiple Versions of R

2011-04-27 Thread Simon Urbanek
On Apr 12, 2011, at 1:27 PM, justin boyd wrote: I would like to install two versions of R on Mac OSX 10.6.7. The two versions I would like to install are 2.10.1 and 12.2.2 for use with StatET in Eclipse. I have successfully installed and used each version respectively with StatET in

Re: [R-SIG-Mac] svg cairo support in 2.12.2 and higher?

2011-04-27 Thread Simon Urbanek
On Apr 27, 2011, at 3:57 AM, Prof Brian Ripley wrote: Try running 32-bit R on your platform: it does contain cairo support. (So does my own x86_64 build of 2.13.0: looks like there is/was a problem on the CRAN build machine. So you could also build R from the sources.) The current R-2.13.0

Re: [R-SIG-Mac] function hint is missing in 2.13.0

2011-05-07 Thread Simon Urbanek
Can you, please, be more specific as of what you expect to see and what you don't see? The hints work just fine for me. Also note that the preference setting applies to the editor, not the console (which shows hints at all times unless R is busy). Cheers, Simon On May 7, 2011, at 5:50 PM,

Re: [R-SIG-Mac] Installing package from source

2011-05-07 Thread Simon Urbanek
There is a lot of missing pieces, but I bet that your package links unversioned libatlas-MacPro.dylib instead of libRblas.dylib and you don't have the appropriate symlinks in x86_64. (Just for the record: this is your mileage may vary setup and is NOT what you get when you install R). There are

Re: [R-SIG-Mac] multiple console windows for the same Mac R instance

2011-05-10 Thread Simon Urbanek
Frank, On May 10, 2011, at 7:06 PM, Frank Tamborello wrote: Is there a way that I can have multiple console windows running for the same instance of R.app/R64.app? I've sometimes found in other IDEs that it can be handy to have this feature, such as Macintosh Common Lisp's ability to have

Re: [R-SIG-Mac] Where are my packages?

2011-05-19 Thread Simon Urbanek
If you simply want to re-install the same packages you had, it's as simple as install.packages(row.names(installed.packages(~/Library/R/2.12/library))) Cheers, Simon On May 19, 2011, at 2:58 PM, Kasper Daniel Hansen wrote: You can have packages two places (1) system wide (2) user

Re: [R-SIG-Mac] Where are my packages?

2011-05-19 Thread Simon Urbanek
On May 19, 2011, at 3:11 PM, Berend Hasselman wrote: On 19-05-2011, at 20:48, Wayne Gray wrote: I just upgraded to 2.13 from 2.12. As far as I can figure things are working well except that none of the packages I downloaded for 2.12 are available to 2.13. That would not be an issue

Re: [R-SIG-Mac] R plot and graphics fonts on Quartz

2011-05-21 Thread Simon Urbanek
Carlo, On May 21, 2011, at 9:10 AM, Carlo Tambuatco wrote: This question has probably been asked to death already, I don't know yet...but when plotting using the Quartz framework on OS X, labels do not show up unless the sans font family is selected beforehand. It usually indicates a

Re: [R-SIG-Mac] packages failed to load

2011-05-24 Thread Simon Urbanek
Ian, I agree with Brian. I checked the CRAN binaries of class and deldir and they are correctly linking to 2.13, so I suspect you have old packages in your tree. I don't think this can happen with stock R binary, it seems that at some point you moved packages or there is/was a symlink between

Re: [R-SIG-Mac] packages failed to load - Now fixed

2011-05-25 Thread Simon Urbanek
Well, that's a bit convoluted way (I really don't see the point of that script) - if you want to re-install packages across R versions (not the topic of this thread!) it is far easier than that and I posted it here just a few days ago: # for packages from user location:

Re: [R-SIG-Mac] packages failed to load - Now fixed

2011-05-25 Thread Simon Urbanek
On May 25, 2011, at 7:17 AM, Tom Hopper wrote: On Wed, May 25, 2011 at 11:50, Prof Brian Ripley rip...@stats.ox.ac.ukwrote: On Wed, 25 May 2011, Tom Hopper wrote: Brian, Since the problem was fixed by updating packages with checkBuilt=T, wouldn't installing packages fresh using the

[R-SIG-Mac] Key bindings in the GUI [Was: ? as a valid help request]

2011-05-25 Thread Simon Urbanek
On May 25, 2011, at 1:10 PM, David Winsemius wrote: On May 25, 2011, at 12:50 PM, Berend Hasselman wrote: Home will move the cursor to the start of a line End will move the cursor to the end of a line Not on my machine in the GUI. Goes to top or bottom of the console window.

Re: [R-SIG-Mac] ? as a valid help request

2011-05-25 Thread Simon Urbanek
On May 25, 2011, at 1:41 PM, Timothy Bates wrote: Hans said: did you try to simply select the function and press CTRL+H or right-click for content menu and select Show Help for current Function”? fantastic Hans! PS: I looked in the help menu and saw nothing like “help on selection

Re: [R-SIG-Mac] R Workspace Browser filterable and sortable (pref by size)

2011-05-26 Thread Simon Urbanek
David, On May 26, 2011, at 1:53 PM, David Winsemius wrote: On May 26, 2011, at 1:10 PM, Hans-Jörg Bibiko wrote: On 26 May 2011, at 18:19, David Winsemius wrote: On May 26, 2011, at 11:44 AM, Timothy Bates wrote: Fantastic that the revamped editor has variable finding (type yourData$

Re: [R-SIG-Mac] R.app GUI crashes on startup -- moved Rhistory, no Rdata, no crash menu

2011-06-16 Thread Simon Urbanek
Michael, On Jun 16, 2011, at 8:40 PM, Michael Gilbert wrote: Hi — As my first post on this list, I'll try to be complete but succinct. This is the symptom described in the R for Max OSX FAQ 12.16: R.app GUI crashes on startup This started for me on Version 2.13, running on Mac OS

Re: [R-SIG-Mac] GEO querry, Rcurl, and paths

2011-06-20 Thread Simon Urbanek
On Jun 20, 2011, at 1:34 PM, Sean Davis wrote: On Mon, Jun 20, 2011 at 1:27 PM, Simon Urbanek simon.urba...@r-project.org wrote: On Jun 20, 2011, at 12:32 PM, Julin Maloof wrote: Hello, Not sure if this is a mac problem or not, so feel free to suggest a redirect. It's

Re: [R-SIG-Mac] ./configure cannot use Fortran

2011-06-29 Thread Simon Urbanek
On Jun 29, 2011, at 11:29 PM, robin hankin wrote: Hi macosx 10.6.7, brand new machine. Trying to compile R 2.13.0 from sources. As per the mac faq, I have installed Xcode 3.2.6 and gfortran 4.2.3, downloaded directly from the link on the macOSX-FAQ page. The $PATH seems to check

Re: [R-SIG-Mac] multicore package: collecting results

2011-06-30 Thread Simon Urbanek
to both of you! Vincent Le 29 juin 2011 à 21:48, Simon Urbanek a écrit : On Jun 29, 2011, at 2:59 PM, Mike Lawrence wrote: Is the slowdown happening while mclapply runs or while you're doing the rbind? If the latter, I wonder if the code below is more efficient than using rbind

Re: [R-SIG-Mac] building a package on a Mac: pdflatex

2011-07-05 Thread Simon Urbanek
Federico, both are entirely irrelevant - run system(pdflatex --version) in R - that is the only thing that counts. If it shows an error, then you don't have pdflatex on your PATH which would be the problem. As a side note, you are showing two separate TeX packages which may not help you to find

Re: [R-SIG-Mac] building a package on a Mac: pdflatex

2011-07-05 Thread Simon Urbanek
On Jul 5, 2011, at 9:48 AM, David Winsemius wrote: On Jul 5, 2011, at 9:10 AM, Federico Calboli wrote: Simon, both are entirely irrelevant - run system(pdflatex --version) in R - that is the only thing that counts. If it shows an error, then you don't have pdflatex on your PATH

Re: [R-SIG-Mac] gfortran, tclck and /usr/local

2011-07-11 Thread Simon Urbanek
On Jul 11, 2011, at 12:05 PM, Federico Calboli wrote: Hi, can I ask if anyone can tell me which of these files belongs to the Gfortran and tcltk R Mac tools instalation please: I suppose you mean GNU Fortran - but which one? The recent ones live along Xcode so the answer would be none.

Re: [R-SIG-Mac] last successful build of R-devel?

2011-07-11 Thread Simon Urbanek
On Jul 11, 2011, at 12:29 PM, Simon Urbanek wrote: On Jul 11, 2011, at 12:16 PM, Vincent Carey wrote: is there a location where the last successful build of R-devel binary for macosx can be retrieved? http://r.research.att.com/R-devel-leopard.pkg Oops - that seems to be wrong due

Re: [R-SIG-Mac] R-Gui with remote execution?

2011-07-15 Thread Simon Urbanek
On Jul 15, 2011, at 3:20 PM, Robert Chatfield wrote: We have three Macs, one with considerably more storage and processor power. Storage requirements are probably most important to us. Is there a way to run R-Gui on one mac but have the execution on a remote mac? (I know that

Re: [R-SIG-Mac] R-Gui with remote execution?

2011-07-15 Thread Simon Urbanek
On Jul 15, 2011, at 3:20 PM, Robert Chatfield wrote: We have three Macs, one with considerably more storage and processor power. Storage requirements are probably most important to us. Is there a way to run R-Gui on one mac but have the execution on a remote mac? (I know that

Re: [R-SIG-Mac] R-Gui with remote execution?

2011-07-15 Thread Simon Urbanek
On Jul 15, 2011, at 6:08 PM, Steven McKinney wrote: -Original Message- From: r-sig-mac-boun...@r-project.org [mailto:r-sig-mac-boun...@r-project.org] On Behalf Of Simon Urbanek Sent: July-15-11 12:54 PM To: Robert Chatfield Cc: r-sig-mac@r-project.org Subject: Re: [R-SIG-Mac

Re: [R-SIG-Mac] up-arrow in console

2011-07-19 Thread Simon Urbanek
Check cleanup history entries in the Preferences if you don't like this. It is in fact the default AFAIR so I'm not sure why it's disabled for you. Cheers, S On Jul 19, 2011, at 12:31 PM, Day, Roger S wrote: Hi, Hans, Got another curiosity for you! A changed behavior in the new

Re: [R-SIG-Mac] gfortran for lion

2011-08-06 Thread Simon Urbanek
On Aug 3, 2011, at 7:19 AM, Jaffe, Andrew H wrote: Dear all, I was attempting to install the latest gfortran for OS X 10.7 Lion. I note that there is an Xcode add-on version for Lion. Its readme screen does indeed claim that this GNU Fortran 4.2.4 for Xcode 4.1. However: * the

Re: [R-SIG-Mac] gfortran for lion

2011-08-06 Thread Simon Urbanek
On Aug 6, 2011, at 10:33 AM, Jaffe, Andrew H wrote: Dear Simon, On 6 Aug 2011, at 15:17, Simon Urbanek wrote: On Aug 3, 2011, at 7:19 AM, Jaffe, Andrew H wrote: I was attempting to install the latest gfortran for OS X 10.7 Lion. I note that there is an Xcode add-on version for Lion

Re: [R-SIG-Mac] Unicode characters in script?

2011-08-11 Thread Simon Urbanek
On Aug 11, 2011, at 2:35 PM, Michael Hoban wrote: Hi all- I tried searching before posting, but this is one of those tricky questions to search for. My issue is this: within the R.app gui, I can use extended characters in plot labels without any issue (specifically in my case the ∂,

Re: [R-SIG-Mac] Install multiple versions of R on Mac

2011-08-16 Thread Simon Urbanek
.? with RSwitch, the R-2.13 startup is interacting with the R-2.14 R.app in some fashion that Simon Urbanek might be able to explain but which I have not yet worked out. R.app is always tied to a particular R version, because it's compiled against R (the path to libR.dylib contains the version). So

Re: [R-SIG-Mac] Run R through Stata

2011-09-06 Thread Simon Urbanek
On Sep 6, 2011, at 10:51 PM, Daniel Marcelino wrote: Hi all, I'm trying to figure out how 'rsource' - a user written package for Stata could works on Mac. Basically, this package send R commands through Stata interface. To do so, it needs to find and execute R on background. The command

Re: [R-SIG-Mac] How to start two different versions of R on a Mac (in emacs)?

2011-09-16 Thread Simon Urbanek
` scripts by hand. HTH, -steve On Fri, Sep 16, 2011 at 9:18 AM, Simon Urbanek simon.urba...@r-project.org wrote: On Sep 16, 2011, at 12:57 AM, Hofert Jan Marius wrote: On 2011-09-16, at 02:30 , Simon Urbanek wrote: On Sep 14, 2011, at 3:02 PM, Hofert Jan Marius wrote: Dear Simon

Re: [R-SIG-Mac] How to start two different versions of R on a Mac (in emacs)?

2011-09-16 Thread Simon Urbanek
, Sep 16, 2011 at 11:15 AM, Simon Urbanek simon.urba...@r-project.org wrote: Just a quick heads-up on that guide -- installing nightlies from tar balls has some consequences you may want to be aware of. Most notably the installer scripts in the .pkg make sure R architectures match your system

Re: [R-SIG-Mac] How to start two different versions of R on a Mac (in emacs)?

2011-09-16 Thread Simon Urbanek
On Sep 16, 2011, at 11:56 AM, Simon Urbanek wrote: On Sep 16, 2011, at 11:46 AM, Steve Lianoglou wrote: Hi Simon, Thanks for the quick reply ... very informative. I don't exactly follow on what the compiling issues are, though. You said: The only remaining difference

Re: [R-SIG-Mac] cannot load rjags package on Mac

2011-09-16 Thread Simon Urbanek
Wei, the CRAN binary uses JAGS 2.x so you'll have to download and install JAGS 2.2.0. Currently, JAGS 3.x is unsupported because we there is no official JAGS 3.x binary for ppc anymore which is a requirement for rjags to be built on CRAN. I will have a look at JAGS later today to see if there

Re: [R-SIG-Mac] three dot problem

2011-09-19 Thread Simon Urbanek
On Sep 19, 2011, at 1:04 PM, Erich Neuwirth wrote: When I define functions using the tree dot tool, R64.app has problems innerfun - function(...) print(...) …… When I sate the one line definition above into R64.app, R prints what you see above, including the three dots, and I need to

Re: [R-SIG-Mac] Compiling a portable binary that includes Fortran code

2011-09-19 Thread Simon Urbanek
Michael, the problem has nothing to do with your package (you should not be touching any flags at all), but rather the Fortran you use. If you have both static and dynamic fortran runtime, the dynamic one has always precedence. So there are essentially two possible ways forward: a) use static

Re: [R-SIG-Mac] Compiling a portable binary that includes Fortran code

2011-09-20 Thread Simon Urbanek
myself and I would not recommend it if you want to produce binaries for others, but it's your choice. Cheers, Simon I know these must seem like ridiculously basic questions, so I appreciate your patience with them. Michael Sent from my iPad On Sep 19, 2011, at 10:41 PM, Simon

Re: [R-SIG-Mac] use of optional 3rd party libs

2011-09-22 Thread Simon Urbanek
Kasper, On Sep 22, 2011, at 8:11 PM, Kasper Daniel Hansen wrote: This is just a FYI. If I use the cairo lib from the optional 3rd party libs from http://R.research.att.com/libs/ and I compile R-2.13 (patched) from scratch I do not get cairo support out of the box because I do not have

Re: [R-SIG-Mac] lme4 in Lion?

2011-09-25 Thread Simon Urbanek
Katherine, On Sep 25, 2011, at 10:17 PM, Katherine Hayden wrote: Hi, Is lme4 working well in Lion? Yes. I haven't been able to get it to load on my 0S 10.7 Mac, How did you install it? Try install.packages(lme4) that works for me on Lion without problems. If you have some particular

Re: [R-SIG-Mac] Installing R from source: ../i386/ldpaths: No such file or directory

2011-10-02 Thread Simon Urbanek
Marius, On Oct 2, 2011, at 9:11 AM, Marius Hofert wrote: Hi, I tried to install R from source on a new MacBook Air running 10.7.1. I followed the steps in the R-Faq and did: (1) installed Xcode 4.1 (2) installed a *corresponding* Fortran compiler from http://r.research.att.com/tools -

Re: [R-SIG-Mac] Unable to load local library via GUI

2011-10-03 Thread Simon Urbanek
Noel, the package uses BLAS and your R is setup to build against vecLib BLAS which has bad ID so anything linked against it will have trouble finding libRblas. The simple fix is to switch to R BLAS instead of vecLib BLAS (see R for Mac FAQ 12.5). Alternatively update to R 2.13.2, the issue has

Re: [R-SIG-Mac] Unable to load local library via GUI

2011-10-04 Thread Simon Urbanek
virus, data corruption, delay, interruption, unauthorised access or unauthorised amendment. This notice should not be removed. On 04/10/2011, at 2:05 PM, Simon Urbanek wrote: Noel, the package uses BLAS and your R is setup to build against vecLib BLAS which has bad ID so

Re: [R-SIG-Mac] Multiple R versions: set Current via symbolic link: permissions?

2011-10-11 Thread Simon Urbanek
On Oct 11, 2011, at 6:24 AM, Marius Hofert wrote: Hi, I have multiple R versions installed and would like to switch between them via setting the symblic link Current. To make this a bit more convenient, I defined two aliases in .bashrc: alias

Re: [R-SIG-Mac] Multiple R versions: set Current via symbolic link: permissions?

2011-10-11 Thread Simon Urbanek
On Oct 11, 2011, at 10:35 AM, Marius Hofert wrote: On 2011-10-11, at 16:19 , Simon Urbanek wrote: On Oct 11, 2011, at 6:24 AM, Marius Hofert wrote: Hi, I have multiple R versions installed and would like to switch between them via setting the symblic link Current. To make

Re: [R-SIG-Mac] Installing or Compiling EDGE

2011-10-11 Thread Simon Urbanek
On Oct 11, 2011, at 6:49 AM, Morri Feldman wrote: Hello, I hope this is an appropriate mailing list for my question. If not, please excuse me and point me towards another forum if possible. I'm trying to install a microarray analysis software package called EDGE which relies on R. The

Re: [R-SIG-Mac] Multiple R versions: set Current via symbolic link: permissions?

2011-10-11 Thread Simon Urbanek
On Oct 11, 2011, at 10:46 AM, Marius Hofert wrote: You permissions are odd - this is not what installed R looks like, you should see ginaz:Versions$ ls -l total 8 drwxrwxr-x 6 root admin 204 Mar 26 2010 2.12 drwxrwxr-x 6 root admin 204 Jul 12 15:44 2.13 drwxrwxr-x 6 root admin

Re: [R-SIG-Mac] rgl on 10.7: has anyone tried it?

2011-10-11 Thread Simon Urbanek
On Oct 11, 2011, at 4:10 PM, Marius Hofert wrote: Dear all, I tried to install the package rgl on 10.7. Here's the output: ## install.packages(rgl, type=source) install.packages(rgl, type=source) Installing

Re: [R-SIG-Mac] rgl on 10.7: has anyone tried it?

2011-10-11 Thread Simon Urbanek
On Oct 11, 2011, at 6:07 PM, Duncan Murdoch wrote: On 11-10-11 5:04 PM, Simon Urbanek wrote: On Oct 11, 2011, at 4:10 PM, Marius Hofert wrote: Dear all, I tried to install the package rgl on 10.7. Here's the output

Re: [R-SIG-Mac] rgl on 10.7: has anyone tried it?

2011-10-11 Thread Simon Urbanek
, Marius Hofert wrote: On 2011-10-12, at 00:37 , Simon Urbanek wrote: On Oct 11, 2011, at 6:33 PM, Marius Hofert wrote: On 2011-10-12, at 00:12 , Simon Urbanek wrote: On Oct 11, 2011, at 6:01 PM, Marius Hofert wrote: On 2011-10-11, at 23:30 , Simon Urbanek wrote: On Oct 11

Re: [R-SIG-Mac] How to overcome Java error?

2011-10-13 Thread Simon Urbanek
Luca, On Oct 13, 2011, at 5:45 AM, Luca Meyer wrote: Hi, I have to upload data from more than 200 separated excel pages and I am using the read.xlsx function in the xlsx package. Each sheet is an articulated page (made of more than one table plus extra data) and I need to load into a R

Re: [R-SIG-Mac] 2.14.0 alpha hangs after fg after ctrl-Z

2011-10-15 Thread Simon Urbanek
On Oct 14, 2011, at 6:45 AM, Vincent Carey wrote: i am running R version 2.14.0 alpha (2011-10-03 r57154) in an X11 terminal. i build from source. i often use ctrl-Z to pause the session and return to it via fg. i find that R hangs upon fg -- it does not respond to ctrl-C and ctrl-\ takes

Re: [R-SIG-Mac] Java error loading deducer

2011-10-20 Thread Simon Urbanek
Federico, you have to load Deducer from JGR, you can't load it in a regular R session. Download the JGR launcher from the JGR website: for Mac OS X 10.6 or higher: http://rforge.net/JGR/web-files/JGR-1.6-SL.dmg for Mac OS X 10.5: http://rforge.net/JGR/web-files/JGR.dmg and then double-click on

Re: [R-SIG-Mac] Trouble installing BMA package

2011-10-20 Thread Simon Urbanek
On Oct 20, 2011, at 11:17 AM, Michael Mason wrote: To whom it may concern, I am unable to install BMA (not BaM). am using the MAC OS Lion with R version is R2.13. I am using a Washington state mirror ( 82: USA (WA 1) ) I have also tried: 83: USA (WA 2) 70: USA (CA 1) 29: Germany

Re: [R-SIG-Mac] problem installing geepack package

2011-10-25 Thread Simon Urbanek
On Oct 25, 2011, at 3:23 AM, Prof Brian Ripley wrote: This is something you need to take up with the geepack maintainer (who is also the doBy maintainer). I find his misuse of Depends ridiculous: we have Suggests and Enhances for such loose dependencies. You can easily get snow, as a

Re: [R-SIG-Mac] lme4 installation problems in Lion

2011-10-26 Thread Simon Urbanek
On Oct 26, 2011, at 7:31 PM, John L. Woodard, Ph.D. wrote: Dear List, I'm trying to install lme4 on a MacBook Air running Lion OSX 10.7.2. I first used the command: install.packages(lme4, repos=http://R-Forge.R-project.org;) to download lme4. Then when I tried to load the library, I

Re: [R-SIG-Mac] Building R on Mac OSX 10.6.8

2011-10-26 Thread Simon Urbanek
On Oct 26, 2011, at 11:01 PM, Dave Pugmire wrote: Hi, I'm trying to build 2.13.2 on OSX 10.6.8 as follows: ./configure CXX=g++ CC=gcc CFLAGS=-fno-common -fexceptions -O2 CXXFLAGS=-fno-common -fexceptions -O2 --without-readline --enable-R-shlib --without-recommended-packages --prefix=/sw/R

Re: [R-SIG-Mac] build and install

2011-11-08 Thread Simon Urbanek
This is just a shot in the dark since you didn't provide any details about the package: chances are that you have invalid characters in one of the source files and/or your'e trying to source something that doesn't exist. Consider putting your package somewhere so we can have a look... Cheers,

Re: [R-SIG-Mac] R 2.14.0 on MacBook Pro

2011-11-10 Thread Simon Urbanek
Jan, On Nov 10, 2011, at 6:02 AM, Verbesselt, Jan wrote: Dear all, I have just upgraded from 2.13.2 to 2.14.0 on my mac book pro on 10.6.8 OsX. After installing the zoo package - I am unable to load the zoo package in R using R64.app. What is causing this problem? Everything used to

Re: [R-SIG-Mac] Rcmdr 1.7.2 on Mac

2011-11-10 Thread Simon Urbanek
John, can you, please, be more specific? Rcmds from CRAN works just fine for me -- can you at least include the exact error and sessionInfo()? Thanks, Simon On Nov 10, 2011, at 5:24 PM, John Fox wrote: Dear Kristian, Odd as it seems, I think that the problem is with the CRAN build of the

Re: [R-SIG-Mac] Rcmdr 1.7.2 on Mac

2011-11-10 Thread Simon Urbanek
MASS_7.3-16 loaded via a namespace (and not attached): [1] tools_2.14.0 -Original Message- From: Simon Urbanek [mailto:simon.urba...@r-project.org] Sent: November-10-11 6:29 PM To: John Fox Cc: 'Kristian Hovde Liland'; r-sig-mac@r-project.org Subject: Re: [R-SIG-Mac] Rcmdr

Re: [R-SIG-Mac] Error while loading packages R 2.14.0

2011-11-15 Thread Simon Urbanek
On Nov 14, 2011, at 10:01 PM, Dan Tenenbaum wrote: Hi Simon, On Mon, Nov 14, 2011 at 5:34 PM, Simon Urbanek simon.urba...@r-project.org wrote: On Nov 14, 2011, at 6:54 PM, Riccardo Romoli wrote: Hello, I try to install netCDF using: ./configure --prefix=/usr/local/ --disable

Re: [R-SIG-Mac] Error while loading packages R 2.14.0

2011-11-15 Thread Simon Urbanek
On Nov 15, 2011, at 1:29 AM, Hervé Pagès wrote: On 11-11-12 11:30 PM, Prof Brian Ripley wrote: On Sun, 13 Nov 2011, Riccardo Romoli wrote: Hi, I have already installed R 2.14.0 and I have some problem to load several packages, in particular xcms package. I installed it directly from the

Re: [R-SIG-Mac] R Switch - incomplete installation

2011-11-15 Thread Simon Urbanek
On Nov 15, 2011, at 5:49 PM, Garth Howell wrote: Hello, I am trying to switch between R 2.14.0 (from CRAN) and R-devel (from http://r.research.att.com). I am using the R Switch application. First I completely removed R, by moving R.app to the trash and doing this: rm -rf

Re: [R-SIG-Mac] Error while loading packages R 2.14.0

2011-11-15 Thread Simon Urbanek
On Nov 15, 2011, at 8:36 PM, Dan Tenenbaum wrote: Hi all, 2011/11/15 Hervé Pagès hpa...@fhcrc.org: On 11-11-15 06:26 AM, Simon Urbanek wrote: On Nov 15, 2011, at 1:29 AM, Hervé Pagès wrote: On 11-11-12 11:30 PM, Prof Brian Ripley wrote: On Sun, 13 Nov 2011, Riccardo Romoli wrote

Re: [R-SIG-Mac] Error while loading packages R 2.14.0

2011-11-15 Thread Simon Urbanek
Dan, static hdf5-1.8.8 and netcdf-4.1.3 are now in http://r.research.att.com/libs/ (and also on the CRAN machine). Cheers, Simon On Nov 15, 2011, at 9:40 PM, Simon Urbanek wrote: On Nov 15, 2011, at 8:36 PM, Dan Tenenbaum wrote: Hi all, 2011/11/15 Hervé Pagès hpa...@fhcrc.org: On 11

Re: [R-SIG-Mac] error while loading 'gstat' on R 2.14.0

2011-11-19 Thread Simon Urbanek
Edmund, your gstat is for R 2.13.x yet you are running R 2.14.0. Please update your gstat package. Cheers, Simon On Nov 7, 2011, at 11:14 AM, Edmund Har wrote: Hi all, I am trying to install gstat 1.0-8 on R version 2.14.0 (32-bit) on my MacBook Pro (Mac OS X 10.6.8). I downloaded the

Re: [R-SIG-Mac] R 2.14.0 on MacBook Pro

2011-11-19 Thread Simon Urbanek
On Nov 16, 2011, at 1:36 PM, Christopher Giguere wrote: Hello everyone, I am working on a Mac OS X 10.6.8 (10K549). I need to install the package * fracdiff*. When I first ran into an issue I upgraded to R version 2.14 and tried to install again. Each time the Package Installer returned

Re: [R-SIG-Mac] Hmisc doesn't load

2011-11-19 Thread Simon Urbanek
On Nov 19, 2011, at 5:56 AM, Prof Brian Ripley wrote: See the list archives. Are you doing this in R.app, and have you updated R 2.14.0 recently? .. or reinstalled Hmisc? Try install.packages(Hmisc,,http://cran.r-project.org;) Cheers, Simon On Mon, 14 Nov 2011, Michael Kubovy wrote:

Re: [R-SIG-Mac] manually load package

2011-11-22 Thread Simon Urbanek
On Nov 22, 2011, at 8:38 PM, Lara R. Appleby 04 wrote: How do I compile an R source package? I run OS 10.7.2 and have installed Xcode and gfortran-4.4.0. You use R CMD INSTALL Alternatively you can use install.packages(..., type='source') if you want to compile a package form CRAN. See

Re: [R-SIG-Mac] Valgrind on Snow Leopard or Lion

2011-11-27 Thread Simon Urbanek
Ruth, On Nov 27, 2011, at 4:39 PM, Ruth Ripley wrote: I have been tying to get valgrind to run on Snow Leopard and Lion without much success. Make sure you get the latest SVN build. Valgrind releases notoriously don't work on Darwin. I had no problem using valgrind (from SVN) on both Lion

Re: [R-SIG-Mac] How to make Mac 64-bit version feature complete?

2011-12-10 Thread Simon Urbanek
Adam, On Dec 7, 2011, at 9:07 AM, Adam Strzelecki wrote: Hello R Community, I have recently started using R for my PhD work. Aside of that I am Mac and iOS developer since few years. As far I can see R package for Mac comes in two flavors, R (32-bit) and R64 (64-bit). Not really - it's

Re: [R-SIG-Mac] Help on using R CMD SHLIB for compiling shared libraries calling Fortran?

2011-12-13 Thread Simon Urbanek
Jooil, most recent Xcode in Lion removes gcc-4.2, so you may want to install it from either from Xcode 4.0/4.1 or from http://r.research.att.com/tools/ The direct link is http://r.research.att.com/tools/gcc-42-5666.3-darwin11.pkg Also you can remove the Fortran you installed before (using

Re: [R-SIG-Mac] How to make Mac 64-bit version feature complete?

2011-12-14 Thread Simon Urbanek
On Dec 14, 2011, at 3:42 PM, Adam Strzelecki wrote: I guess this discussion is going nowhere. Since I am always wrong I give up. I would consider understanding/learning a more productive approach than surrender, but it's up to you ;). From the beginning you were confusing several entirely

Re: [R-SIG-Mac] How to make Mac 64-bit version feature complete?

2011-12-16 Thread Simon Urbanek
On Dec 14, 2011, at 11:38 AM, Timothy Bates wrote: On 14 Dec 2011, at 4:24 PM, Adam Strzelecki wrote: In addition, there is no benefit in creating universal binaries, since they are very Darwin-specific and bring no benefit in this context. There's a huge benefit of doing that. I do

Re: [R-SIG-Mac] How to make Mac 64-bit version feature complete?

2011-12-16 Thread Simon Urbanek
On Dec 16, 2011, at 12:50 PM, David Winsemius wrote: On Dec 16, 2011, at 11:20 AM, Simon Urbanek wrote: On Dec 14, 2011, at 11:38 AM, Timothy Bates wrote: On 14 Dec 2011, at 4:24 PM, Adam Strzelecki wrote: In addition, there is no benefit in creating universal binaries, since

Re: [R-SIG-Mac] Function argument display on GUI console border

2011-12-16 Thread Simon Urbanek
On Dec 16, 2011, at 1:35 PM, David Winsemius wrote: On Dec 16, 2011, at 1:18 PM, Simon Urbanek wrote: On Dec 16, 2011, at 12:54 PM, David Winsemius wrote: The display of function arguments along the lower border of the Console window now seems very erratic. If I now type

Re: [R-SIG-Mac] Any script to package a built R binary to a Mac OS X installer?

2011-12-21 Thread Simon Urbanek
On Dec 21, 2011, at 3:10 PM, Prof Brian Ripley wrote: On 21/12/2011 19:49, Sang Chul Choi wrote: First, I apologize for sending this duplicate message to r-sig-gui. I thought that was the mailing list I should send questions about Mac GUI. I found that this r-sig-mac mailing list was the

Re: [R-SIG-Mac] problems loading tcl/tk to use sqldf in R on Mac with Lion OS

2012-01-03 Thread Simon Urbanek
On Jan 3, 2012, at 3:12 PM, Jane Smith wrote: Hi , I noticed some posts that are old regarding problems with loading tcl/tk but I tried the fix that was posted previously (going to the CRAN site and manually downloading the tcltk.dmg) but this did not work. What didn't work? Downloading

Re: [R-SIG-Mac] gcc, gfortran and Xcode upgrade

2012-01-17 Thread Simon Urbanek
On Jan 17, 2012, at 9:27 AM, Federico Calboli wrote: Hi, I am on OS X 10.7.2, Xcode 4.2.1, R 2.14.1 (GUI 6008) and I was wondering what would happen if I installed gcc-4.2 (Apple build 5666.3) with GNU Fortran 4.2.4 for Mac OS X 10.7 (Lion) (from http://r.research.att.com/tools/)

Re: [R-SIG-Mac] gcc, gfortran and Xcode upgrade

2012-01-18 Thread Simon Urbanek
On Jan 18, 2012, at 1:15 AM, Charlie Sharpsteen wrote: On Tuesday, January 17, 2012 6:57:55 AM UTC-8, Simon Urbanek wrote: On Jan 17, 2012, at 9:27 AM, Federico Calboli wrote: Hi, I am on OS X 10.7.2, Xcode 4.2.1, R 2.14.1 (GUI 6008) and I was wondering what would happen if I

Re: [R-SIG-Mac] workspace not loaded when *.rdata is opened in finder

2012-01-23 Thread Simon Urbanek
On Jan 23, 2012, at 6:56 AM, Randy Lai wrote: R workspace is not loaded when a rdata file is opened in finder. However, It happens only when R is closed. When R is opened and rdata is opened in finder, the workspace is loaded. Your message is a bit cryptic, but if the way I parse it you're

Re: [R-SIG-Mac] Multiple R versions: set Current via symbolic link: permissions?

2012-01-26 Thread Simon Urbanek
On Jan 26, 2012, at 4:44 PM, Peter Carr wrote: That thread does help and it provides enough information to solve most of my problem. However, it is not clear to me how to change the R_HOME directory so that it is not in the /Library/Frameworks/R.framework directory. This is important to me

Re: [R-SIG-Mac] Lion and X11

2012-01-28 Thread Simon Urbanek
Martin, can you specify more precisely what you're doing? Issuing the code you sent would use Quartz, so apparently you're doing other things that you didn't mention - so can you share those so we can try to reproduce it? Thanks, Simon On Jan 27, 2012, at 7:17 PM, Martin Renner wrote: Hi

[R-SIG-Mac] locales on OS X [Was: Lion and X11]

2012-01-28 Thread Simon Urbanek
Christian, what exactly are you talking about? This is entirely unrelated to the thread you replied to and you're mixing several completely unrelated things below. The locale is set by your system, not by R. To break down the situations: - R on the console uses the locale set by the shell it

Re: [R-SIG-Mac] Lion and X11

2012-01-28 Thread Simon Urbanek
On Jan 28, 2012, at 1:46 PM, cstrato wrote: Yes, although I have started X11.app and run R from within an xterm I get: plot(1:8) No protocol specified Error in X11(d$display, d$width, d$height, d$pointsize, d$gamma, d$colortype, : unable to start device X11 In addition: Warning

Re: [R-SIG-Mac] Lion and X11

2012-01-28 Thread Simon Urbanek
Martin, On Jan 28, 2012, at 9:31 PM, Simon Urbanek wrote: On Jan 28, 2012, at 8:21 PM, Martin Renner wrote: Thank you to everybody who replied! Simon, on my machine, I can reproduce this segfault every time using these steps: - open Terminal.app (or iTerm or Aquamacs), start R

Re: [R-SIG-Mac] ESC key and STOP button not working in R 2.14.1

2012-01-29 Thread Simon Urbanek
On Jan 27, 2012, at 3:46 PM, Eliot wrote: wow i really don't like this new behavior. can we make it stop? Yes, the most recent GUI is back to the old behavior. Cheers, S ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org

Re: [R-SIG-Mac] PATH

2012-01-30 Thread Simon Urbanek
On Jan 30, 2012, at 12:06 PM, Guillaume Meurice wrote: Dear all, I can't figure out how R.app is getting my environment variable $PATH. Try R for Mac FAQ 12.19. Launching R via a terminal perfectly get my $PATH variable : Sys.getenv()[[PATH]] [1]

Re: [R-SIG-Mac] OSX Binary Installation and testInstalledPackages()

2012-02-01 Thread Simon Urbanek
Marc, On Feb 1, 2012, at 12:13 PM, Marc Schwartz wrote: Hi all, I have been building R from source for a number of years on Linux and for the past 3 years, on OSX. Since circa version 2.9.0 I believe, there have been functions available in the 'tools' package to run post-installation

Re: [R-SIG-Mac] OSX Binary Installation and testInstalledPackages()

2012-02-02 Thread Simon Urbanek
The current builds now contains tests. As Brian noted size is probably not an issue anymore so it was the easiest to simply run install-tests in the build. Cheers, Simon On Feb 1, 2012, at 2:18 PM, Marc Schwartz wrote: Hi Simon, On Feb 1, 2012, at 12:08 PM, Simon Urbanek wrote: Marc

Re: [R-SIG-Mac] OSX Binary Installation and testInstalledPackages()

2012-02-02 Thread Simon Urbanek
! Sure, you're welcome. Cheers, Simon Best regards, Marc On Feb 2, 2012, at 9:40 AM, Simon Urbanek wrote: The current builds now contains tests. As Brian noted size is probably not an issue anymore so it was the easiest to simply run install-tests in the build. Cheers, Simon

Re: [R-SIG-Mac] finding things in R manuals

2012-02-03 Thread Simon Urbanek
On Feb 2, 2012, at 2:37 PM, Ruth Ripley wrote: Dear list, Would it be possible to include the pdf versions of the R manuals in the CRAN mac R install? I find them easier to global search than html ones. (I am used to having them on Windows.) Since we are in the phase of adding things

  1   2   3   4   5   6   7   8   >