[scikit-image] region analysis 3d

Hi every one:I want to do some region analysis for 2d/3d block. I saw the skimage.measure.regionprops is very powerful. But if we can add some feature below: 1. I want to got every 3d block's surface area. The regionprops's area for 3d object meas volumn and the perimeter is only2d,

[scikit-image] 转发：回复：Re: local maxima improvements

ements one with numba, https://github.com/Image-Py/imagepy/blob/master/imagepy/ipyalg/hydrology/findmax.py. you can see if it is useful. yxdragon- 原始邮件 - 发件人：Stefan van der Walt 收件人："Mailing list for scikit-image (http://scikit-image.org)" 主题：Re: [scikit-image] local maxima imp

[scikit-image] 回复：Re: local maxima improvements

ements one with numba, https://github.com/Image-Py/imagepy/blob/master/imagepy/ipyalg/hydrology/findmax.py. you can see if it is useful. yxdragon- 原始邮件 - 发件人：Stefan van der Walt 收件人："Mailing list for scikit-image (http://scikit-image.org)" 主题：Re: [scikit-image] local maxima imp

[scikit-image] 回复：Re: ImagePy 2018

Hi Juan:Thanks for your advice, It's true that ImagePy is quickly hacked together and unprofessional(The main framework is build in 2 months). And that's why I didnot push it on pypi. I will so some clean up in 2018. But some different opinions： 1. about the "promotion&quo

[scikit-image] ImagePy 2018

Hi everyone:I wrote ImagePy in the last year. It's a plugin framework, like ImageJ, but based on Python and Numpy. I wrote a ImageJ style ui at first, but now I wrote a more powerful ui, with a toolbox, many widgets, and a developer sute: macros recorder, python console, command finder..

[scikit-image] 回复：Re: fill closed contour

Hi, just some advice:I think if you did not care the edge-width, you can just do a skeleton, then label it by 4-connect, if you care the edge-width, I think you should trace the line, and got a vector shape(not bitmap). you can use shapely to operate them, and use matplotlib.plot do draw. Canny

[scikit-image] 回复：Re: 回复：Re: my fast watershed has pass all the test_watershed check

my code works for 2.7 and 3.x. I think it's matter of skimage's version. I remember the watershed_line parameter is added in version 13.0. - 原始邮件 - 发件人：Jaime Lopez Carvajal 收件人：[email protected], "Mailing list for scikit-image (http://scikit-image.org)" 主题：Re: [scikit-image] 回复：Re: my f

[scikit-image] 回复：Re: my fast watershed has pass all the test_watershed check

Hi Jaime:All my test are in the following format: def test_watershed01():data = np.array(..., np.uint8)markers = np.array(..., np.uint16)out1 = mywatershed(data, markers)out2 = skwatershed(data, markers)print(np.sum(out1-out2!=0)) every test gets a zero output, but the paramet

[scikit-image] my fast watershed has pass all the test_watershed check

Hi Everyone:I had implemented a watershed by numba, and now it has pass all the test_watershed check and got a exactly same result with skimage, support watershed-line, support connectivity, (pass test 0-12, but mine did not support compact yet) It support nd, now only support uint8 image with u

[scikit-image] 回复： Python 3 transition

Just my own opinion. we can give up python2.x -- YXDragon - 原始邮件 - 发件人：Stefan van der Walt 收件人：[email protected] 主题：[scikit-image] Python 3 transition 日期：2017年11月11日 14点34分 Hi, everyone I'd like to make a 4th attempt to determine our transition pathway to Python 3. The last th

[scikit-image] 回复：Re: my watershed

add one:if scikit-image can implements a ridge filter. just like watershed mixed with the skeleton. make all region a same label, then do level loop, just stop when one pixel left. It's usful in geography and hydrology analysis. - 原始邮件 - 发件人：Juan Nunez-Iglesias 收件人：scikit-image , imag...

[scikit-image] 回复：Re: Code for the short course 'Image Processing using Python', @ IAMG2017

Hi Stefan: "segmentation lesson from the skimage_tutorial repo" did you means this?(https://github.com/scikit-image/skimage-tutorials/blob/master/lectures/4_segmentation.ipynb), I am writing a simple imageprocessing book, It may be useful for me. Best regardsYXDragon- 原始邮件 - 发件人：Stefan v

[scikit-image] 回复：Re: 转发：some question about_h_minma_(need_a_paremeter,_and_can_run_faster)

,_and_can_run_faster) 日期：2017年09月10日 11点29分 Hi, YXDragon On Fri, Sep 8, 2017, at 21:25, [email protected] wrote: So I wrote h_minma/maxma and watershed myself (as a sub package of my project imagepy). My watershed now only support 2D, But the h_minma now is OK, works on nd. I had test one image

[scikit-image] 回复：Re: Release date for 0.14

Hi Juan:What do you mean "undoing the speed regression of watershed"? I found watershed run very slowly with large image, and I am writting one with numba. YXDragon - 原始邮件 - 发件人：Juan Nunez-Iglesias 收件人：scikit-image List Mailing , "Mailing_list_for_scikit-image_(http://sciki

[scikit-image] 回复：Re: 回复： Numba on pypi

Hi ThomasI know local_max has no tolerance, And peak_local_max has some parameter based on distance and abs value,(which the watershed demo in gallery used, but when the area is complex, the result is very massy). the h_max is what I need, but the result is unexpected somewhere, and It is too sl

[scikit-image] 回复： Numba on pypi

Hi Stéfan: I appreciate Numba. for sometimes, we must do a 'for' in our python code, but just a 'for' with a 'if', It is fussy to compile a so/dll or write cython. Numba is very portable, and can run anywhere, just need to install numba and llvmlite. (That means our package could be a light-we

[scikit-image] 回复：Re: building scikit-image plugin and tool set.

, Py3, on Win, Mac ,Linux. You can find Linux whl here and will be avalible in pypi soon. (In fact I had tested ImagePy on win, mac, linux with py2/py3) I think QT and WX are both OK, but wx is more light weighted (just 10M on win), It is friendly for user to download. I also agree with That web

[scikit-image] building scikit-image plugin and tool set.

Hi everyone:In the past half year, I am working on a project ImagePy. I had communicated with several expert here privately, and got many advice. It is a plugin Frame work just like ImageJ, which can wrap any numpy based library. I had reconstructed it many a time, Up to now, It still

[scikit-image] 回复:Re: Fitting Ellipse Model

but i think the opencv's hu moment is a vector implement(integrate contours), but scikit-image one is raster implement(statistic the pixcel coordinate) 来自我的新浪邮箱android客户端 原始邮件 发件人:Stefan van der Walt 时间:2017年6月13日 08:05(星期二) 收件人:Surya Kast

[scikit-image] 回复:Re: 回复: Need help to get graph from image

I has build the networt, look tips 2. imagepy is not a function library, but a interactive framework witch can wrap numpy, scipy, scikitimage, opencv as a friendly.software. by another, please donot save picture as jpg. the dct transform may destroy the high frequent information

[scikit-image] build topograph network from skeleton

Hi everyone:I saw the newest version, require the networkx module. I find some function to find shortest path from image. But I want to know if there is a method to build a network from a skeleton image(2D/3D with arcs and nodes). I wrote one, but in python. it runs very slowly...

[scikit-image] 回复： Reg: Working to create an ROI interactively and then find contours.

It can wrap any function based on numpy, (spicy, scikit-image, opencv, itk ...). This framework can generate interactive dialog automatically acrroding your function's parameter. and support roi, mask, undo. You just need to care your function! It can run on win, Mac, linux under py2.7 or py3x n

[scikit-image] 回复: Reg: Working to create an ROI interactively and then find contours.

https://github.com/yxdragon/imagepy my project. have a look. make scikitimage like photoshop! 原始邮件 发件人:Jesu Kiran Spurgen 时间:2017年5月15日 17:48(星期一) 收件人:[email protected] 主题:[scikit-image] Reg: Working to create an ROI interactively

[scikit-image] 回复: Tools for 3D segmentation ?

I known itk has many 2d,3d segment raster algrism, and cgal has some vector algrism. but it is not a independent work, you must do some pretreatment and use the right method, then the segment work will be esaier. 原始邮件 发件人:Vighnesh Birodkar 时