[spctools-discuss] Re: one question about ProtXML format

2009-09-23 Thread NIKI
wow, the link was exactly what i was looking for. thanks a lot! On 9월23일, 오전7시51분, David Shteynberg wrote: > Yes, that is what n_instances means. This link is a bit old but might > still be helpful: > > http://tools.proteomecenter.org/formats.php > > On Mon, Sep 21, 2009 at 9:16 PM, NIKI wrot

[spctools-discuss] Re: mzwiff problem - some lines with AAAAAAAAAAA

2009-09-23 Thread Bernt
Hi Matt, I have just installed the trial version and already activated it and rebooted the PC. But running msconvert still gives me the message "[WiffFile::ctor] Reading ABI Wiff files requires Protein pilot 3.0 to be installed. A trial version .." The wiff files were acquired on a QSTAR and

[spctools-discuss] Re: mzwiff problem - some lines with AAAAAAAAAAA

2009-09-23 Thread Matthew Chambers
Did you install it to the default location? If not, you'll have to copy these DLLs to the msconvert directory manually: ABSciex.DataAccess.WiffFileDataReader.dll Clearcore.dll ClearCore.Storage.dll rscoree.dll -Matt Bernt wrote: > Hi Matt, > > I have just installed the trial version and alread

[spctools-discuss] running database search through command prompt

2009-09-23 Thread Kris
I've had problems where the tpp interface freezes if I run more than 12 files through database search at one time. So, I have been copying the commands TPP generates (through database search) and pasting them into command prompt. This seems to work much better. Sometimes I will get the commands f

[spctools-discuss] Re: running database search through command prompt

2009-09-23 Thread Brian Pratt
You're running into the usual Apache timeout problem on large jobs, and running from the commandline is actually an excellent workaround. Actually you can very properly view the web UI as a training tool for the use of command line tools. Brian On Wed, Sep 23, 2009 at 10:07 AM, Kris wrote: > >

[spctools-discuss] Re: Where to put ExtractMSN and dll's for .RAW file conversion.

2009-09-23 Thread AndrewK
Natalie, Thanks for the redirection. I am sure that if I load Xcalibur core programs, and provided the correct files from BioWorks in directories that ReAdW expects to find them, that it would work perfectly, not requiring a full installation (doesn't this seem to be a reasonable assumption?). I

[spctools-discuss] Re: Where to put ExtractMSN and dll's for .RAW file conversion.

2009-09-23 Thread Matthew Chambers
The TPP converters rely on the COM component being registered which means that it doesn't matter where the DLL is on the system as long as it's registered with regsvr32. That registration usually happens at install-time without you knowing about it. If you just copy the DLLs to another system,

[spctools-discuss] Spectral library data

2009-09-23 Thread Bin Zhou
Hi, All, Sorry to bother those who are not interested. I'm trying to use the spectral library data provided in PeptideAtlas for some experiment. Is there any way to convert those .splib files into other formats such as mzXML so I can read it into my programming environment? Are those data intend