[spctools-discuss] Re: Stpeter comet vs Xtandem?

2018-06-05 Thread Panos Ioannidis
Hi Jason, Thanks a lot for the information. I would very much like to attend one of your courses, if you guys are having one in Europe. We plan on doing some protein sequencing in our lab in the next few months, so I'm sure the course will be worth it. Thanks again for your time, Panos On

[spctools-discuss] Re: Stpeter comet vs Xtandem?

2018-06-05 Thread Panos Ioannidis
I have recently started playing with proteomics data and I have pretty much the same question as Volkix (although I haven't reached the StPeter step yet)! So what is the main difference between Comet and Xtandem? For example, is one better-suited for particular data than the other? As Volkix

[spctools-discuss] Re: Convert mgf to mzML/mzXML

2018-06-04 Thread Panos Ioannidis
open a new one ;) > > Best > > Antonio > > lørdag den 2. juni 2018 kl. 21.40.08 UTC+2 skrev Panos Ioannidis: >> >> Yes, I did think of setting up a Windows VM for such conversions, and >> maybe it's unavoidable after all... >> >> Thanks a lot for y

[spctools-discuss] Re: TPP 5.1.0 installation fails

2018-06-02 Thread Panos Ioannidis
Hi again Mike, I did try "make clean" and recompiling from the beginning but without luck. I even set up an Ubuntu VM (my machine runs Debian) and used the step by step installation guide for Ubuntu that you have in the wiki. I also tried different g++/gcc versions (4.8, 4.9, 6.0, 7.0, 8.0)

[spctools-discuss] Re: Convert mgf to mzML/mzXML

2018-06-02 Thread Panos Ioannidis
Yes, I did think of setting up a Windows VM for such conversions, and maybe it's unavoidable after all... Thanks a lot for your time! P On Saturday, 2 June 2018 19:06:48 UTC+3, Michael Hoopmann wrote: > > No, there isn't a native tool for Linux that reads vendor formats. > Unfortunately,

[spctools-discuss] Re: Convert mgf to mzML/mzXML

2018-06-02 Thread Panos Ioannidis
Thanks a lot Mike! And what if I want to convert RAW files to mzML in Linux? The Linux version of ProteoWizard tools says that they cannot process vendor files (such as RAW). Is there an alternative? I have already tried using msconvert with wine but didn't work? Is there a conversion tool

[spctools-discuss] Convert mgf to mzML/mzXML

2018-05-31 Thread Panos Ioannidis
Hello, Does anyone know how to convert mgf files to mzML/mzXML? Thanks, Panos -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[spctools-discuss] Re: Running database search from commandline

2018-05-31 Thread Panos Ioannidis
Hello Florian, I know it's been quite a time since you posted, but is there any chance you still have this small program? I'm also interested in running TPP from the commandline... Thanks! Panos On Monday, 19 December 2011 19:29:39 UTC+2, Florian wrote: > > Thanks so much, actually, I found

[spctools-discuss] TPP 5.1.0 installation fails

2018-05-29 Thread Panos Ioannidis
Hello again, Please disregard my last message; I found that you have already posted a solution, which I followed. Unfortunately, however, the installation fails again, although at another point. I'm pasting the failing command below. g++