Thanks Antonio! I will give it a try.
On Sunday, 3 June 2018 16:36:35 UTC+3, Antonio Ortega wrote: > > Hi Panos > > You can give it a try with > https://github.com/compomics/ThermoRawFileParser . It supports raw -> > mgf conversion in Linux, and a raw -> mzML conversion is on the making. I > have successfully been able to extract mgf files from RAW files in Linux > with this tool. > The instructions for how to set it up are given in the README.md file. If > you experience difficulties, have a look at the issues (open and closed), > or open a new one ;) > > Best > > Antonio > > lørdag den 2. juni 2018 kl. 21.40.08 UTC+2 skrev Panos Ioannidis: >> >> Yes, I did think of setting up a Windows VM for such conversions, and >> maybe it's unavoidable after all... >> >> Thanks a lot for your time! >> >> P >> >> On Saturday, 2 June 2018 19:06:48 UTC+3, Michael Hoopmann wrote: >>> >>> No, there isn't a native tool for Linux that reads vendor formats. >>> Unfortunately, vendor formats are proprietary and requires the vendor >>> drivers to access those files and convert them. All of those drivers are >>> Windows only, as the vendors have decided that is their platform of choice. >>> Thermo will eventually release a Linux compatible driver set for Mono, >>> maybe you can even get your hands on the development version - but it will >>> only read the file. Converting it to another format will require additional >>> coding or interfacing with ProteoWizard. >>> >>> One possible solution would be to create a Windows virtual machine for >>> converting vendor formats. It can be fired up inside Linux, then convert >>> the vendor files to mzML using msconvert from ProteoWizard, copy the mzML >>> files back to your Linux filesystem, and wind down the VM. >>> >>> Cheers, >>> Mike >>> >>> -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
