Hey guys,
Great work with the new TPP version! However, we are having issues with
PTMProphet in TPP 5.0.0 (TPP v5.0.0 Typhoon, Build 201610111222-7423
(Windows_NT-x86_64). Regardless of the data I try (iProphet files from
PeptideProphet files from Comet or X!Tandem phosphopeptide identification
Hi Magnus,
>From the error message it seems like it is failing in boost because one of
the input pepXML files or the internally referenced mzML/mzXML data files
cannot be found in the path specified. Can you check the paths of the mzML
files and make sure they are accessible and readable. How
Hi guys!
I think we nailed the problem down to two issues:
a) Empty lines in the pep.xml files lead to a segmentation fault in
PTMProphetParser. This can be fixed by substituting
*data = strstr(nextline, "<"); while(data != NULL) {*
by
*while(data != NULL && data != "") {*
*
Thanks for this. We will correct the problems.
Cheers,
-David
On Fri, Oct 14, 2016 at 9:14 AM, Veit Schwaemmle wrote:
> Hi guys!
>
> I think we nailed the problem down to two issues:
>
> a) Empty lines in the pep.xml files lead to a segmentation fault in
> PTMProphetParser. This can be fixed b
Hi David,
I just posted some explanation where the error came from but cannot see the
post anymore. Did you get it?
Best regards
Veit
On Friday, 14 October 2016 18:10:52 UTC+2, David Shteynberg wrote:
>
> Hi Magnus,
>
> From the error message it seems like it is failing in boost because one of
