Hi David, I just posted some explanation where the error came from but cannot see the post anymore. Did you get it?
Best regards Veit On Friday, 14 October 2016 18:10:52 UTC+2, David Shteynberg wrote: > > Hi Magnus, > > From the error message it seems like it is failing in boost because one of > the input pepXML files or the internally referenced mzML/mzXML data files > cannot be found in the path specified. Can you check the paths of the mzML > files and make sure they are accessible and readable. How are you > running PTMProphet on the commandline? > > Thanks, > -David > > On Fri, Oct 14, 2016 at 5:38 AM, [email protected] <javascript:> < > [email protected] <javascript:>> wrote: > >> Hey guys, >> >> Great work with the new TPP version! However, we are having issues with >> PTMProphet in TPP 5.0.0 (TPP v5.0.0 Typhoon, Build 201610111222-7423 >> (Windows_NT-x86_64). Regardless of the data I try (iProphet files from >> PeptideProphet files from Comet or X!Tandem phosphopeptide identifications >> from ETD data), PTMProphet crashes with the following error message: >> >> This application has requested the Runtime to terminate it in an unusual way. >> Please contact the application's support team for more information. >> >> >> *Command FAILED* >> RETURN CODE:65280 >> >> On the command line, I get: >> >> This application has requested the Runtime to terminate it in an unusual >> way. >> Please contact the application's support team for more information. >> terminate called after throwing an instance of >> 'boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<std::ios_base::failure[abi:cxx11]> >> >> >' >> what(): failed opening file: The system cannot find the file specified. >> : iostream error >> >> >> The PeptideProphet and iProphet results look reasonable (plenty of both >> phospho and non-phospho peptides identified with high probabilities from >> good looking spectra) >> >> Has anyone else seen the same problem? >> >> >> Best regards, >> >> Magnus Palmblad >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to [email protected] >> <javascript:>. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
