Hi David,

I just posted some explanation where the error came from but cannot see the 
post anymore. Did you get it?

Best regards
Veit

On Friday, 14 October 2016 18:10:52 UTC+2, David Shteynberg wrote:
>
> Hi Magnus,
>
> From the error message it seems like it is failing in boost because one of 
> the input pepXML files or the internally referenced mzML/mzXML data files 
> cannot be found in the path specified.  Can you check the paths of the mzML 
> files  and make sure they are accessible and readable.   How are you 
> running PTMProphet on the commandline?
>
> Thanks,
> -David
>
> On Fri, Oct 14, 2016 at 5:38 AM, magnus....@gmail.com <javascript:> <
> magnus....@gmail.com <javascript:>> wrote:
>
>> Hey guys,
>>
>> Great work with the new TPP version! However, we are having issues with 
>> PTMProphet in TPP 5.0.0 (TPP v5.0.0 Typhoon, Build 201610111222-7423 
>> (Windows_NT-x86_64). Regardless of the data I try (iProphet files from 
>> PeptideProphet files from Comet or X!Tandem phosphopeptide identifications 
>> from ETD data), PTMProphet crashes with the following error message:
>>
>> This application has requested the Runtime to terminate it in an unusual way.
>> Please contact the application's support team for more information.
>>
>>
>> *Command FAILED*
>> RETURN CODE:65280 
>>
>> On the command line, I get:
>>
>> This application has requested the Runtime to terminate it in an unusual 
>> way.
>> Please contact the application's support team for more information.
>> terminate called after throwing an instance of 
>> 'boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<std::ios_base::failure[abi:cxx11]>
>>  
>> >'
>>   what():  failed opening file: The system cannot find the file specified.
>> : iostream error
>>
>>
>> The PeptideProphet and iProphet results look reasonable (plenty of both 
>> phospho and non-phospho peptides identified with high probabilities from 
>> good looking spectra)
>>
>> Has anyone else seen the same problem?
>>
>>
>> Best regards,
>>
>> Magnus Palmblad
>>
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