Hi Magnus, >From the error message it seems like it is failing in boost because one of the input pepXML files or the internally referenced mzML/mzXML data files cannot be found in the path specified. Can you check the paths of the mzML files and make sure they are accessible and readable. How are you running PTMProphet on the commandline?
Thanks, -David On Fri, Oct 14, 2016 at 5:38 AM, magnus.palmb...@gmail.com < magnus.palmb...@gmail.com> wrote: > Hey guys, > > Great work with the new TPP version! However, we are having issues with > PTMProphet in TPP 5.0.0 (TPP v5.0.0 Typhoon, Build 201610111222-7423 > (Windows_NT-x86_64). Regardless of the data I try (iProphet files from > PeptideProphet files from Comet or X!Tandem phosphopeptide identifications > from ETD data), PTMProphet crashes with the following error message: > > This application has requested the Runtime to terminate it in an unusual way. > Please contact the application's support team for more information. > > > *Command FAILED* > RETURN CODE:65280 > > On the command line, I get: > > This application has requested the Runtime to terminate it in an unusual > way. > Please contact the application's support team for more information. > terminate called after throwing an instance of 'boost::exception_detail:: > clone_impl<boost::exception_detail::error_info_injector< > std::ios_base::failure[abi:cxx11]> >' > what(): failed opening file: The system cannot find the file specified. > : iostream error > > > The PeptideProphet and iProphet results look reasonable (plenty of both > phospho and non-phospho peptides identified with high probabilities from > good looking spectra) > > Has anyone else seen the same problem? > > > Best regards, > > Magnus Palmblad > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To post to this group, send email to spctools-discuss@googlegroups.com. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
