Hi All,
I am seeing some funky behavior and am hoping someone has some ideas on
where to start looking. I have installed openmpi 4.1.4 via spack on this
cluster, Slurm aware. I then build Orca against that via spack as well
(for context). Orca calls mpi under the hood with simple `mpirun -np X
t here on the mailing list.
--
Jeff Squyres
jsquy...@cisco.com
From: users on behalf of Jeff Squyres
(jsquyres) via users
Sent: Thursday, May 5, 2022 3:31 PM
To: George Bosilca; Open MPI Users
Cc: Jeff Squyres (jsquyres)
Subject: Re: [OMPI users] mpirun hangs on m
2022 3:19 PM
To: Open MPI Users
Cc: Jeff Squyres (jsquyres); Scott Sayres
Subject: Re: [OMPI users] mpirun hangs on m1 mac w openmpi-4.1.3
That is weird, but maybe it is not a deadlock, but a very slow progress. In the
child can you print the fdmax and i in the frame do_child.
George.
On Thu,
That is weird, but maybe it is not a deadlock, but a very slow progress. In
the child can you print the fdmax and i in the frame do_child.
George.
On Thu, May 5, 2022 at 11:50 AM Scott Sayres via users <
users@lists.open-mpi.org> wrote:
> Jeff, thanks.
> from 1:
>
> (lldb) process attach --pid 9
Jeff, thanks.
from 1:
(lldb) process attach --pid 95083
Process 95083 stopped
* thread #1, queue = 'com.apple.main-thread', stop reason = signal SIGSTOP
frame #0: 0x0001bde25628 libsystem_kernel.dylib`close + 8
libsystem_kernel.dylib`close:
-> 0x1bde25628 <+8>: b.lo 0x1bde25648
You can use "lldb -p PID" to attach to a running process.
--
Jeff Squyres
jsquy...@cisco.com
From: Scott Sayres
Sent: Thursday, May 5, 2022 11:22 AM
To: Jeff Squyres (jsquyres)
Cc: Open MPI Users
Subject: Re: [OMPI users] mpirun hangs on m1 mac
Jeff,
It does launch two mpirun processes (when hung from another terminal window)
scottsayres 95083 99.0 0.0 408918416 1472 s002 R 8:20AM
0:04.48 mpirun -np 4 foo.sh
scottsayres 95085 0.0 0.0 408628368 1632 s006 S+8:20AM
0:00.00 egrep mpirun|foo.sh
scottsayres
happens immediately after forking the
> child process... which is weird).
>
> --
> Jeff Squyres
> jsquy...@cisco.com
>
> ____
> From: Scott Sayres
> Sent: Wednesday, May 4, 2022 4:02 PM
> To: Jeff Squyres (jsquyres)
> Cc: Open MPI Users
> Subject: Re: [OMPI users] mp
ild
process... which is weird).
--
Jeff Squyres
jsquy...@cisco.com
From: Scott Sayres
Sent: Wednesday, May 4, 2022 4:02 PM
To: Jeff Squyres (jsquyres)
Cc: Open MPI Users
Subject: Re: [OMPI users] mpirun hangs on m1 mac w openmpi-4.1.3
foo.sh is executabl
it via:
>>
>> mpirun -np 1 foo.sh
>>
>> If you start seeing output, good!If it completes, better!
>>
>> If it hangs, and/or if you don't see any output at all, do this:
>>
>> ps auxwww | egrep 'mpirun|foo.sh'
>>
>> It should show mp
ut at all, do this:
>
> ps auxwww | egrep 'mpirun|foo.sh'
>
> It should show mpirun and 2 copies of foo.sh (and probably a grep). Does
> it?
>
> --
> Jeff Squyres
> jsquy...@cisco.com
>
> ________
> From: Scott Sayres
>
uy...@cisco.com
From: Scott Sayres
Sent: Wednesday, May 4, 2022 2:47 PM
To: Open MPI Users
Cc: Jeff Squyres (jsquyres)
Subject: Re: [OMPI users] mpirun hangs on m1 mac w openmpi-4.1.3
Following Jeff's advice, I have rebuilt open-mpi by hand using the -g option.
This shows more
Following Jeff's advice, I have rebuilt open-mpi by hand using the -g
option. This shows more information as below. I am attempting George's
advice of how to track the child but notice that gdb does not support
arm64. attempting to update lldb.
scottsayres@scotts-mbp openmpi-4.1.3 % lldb mpir
Sent: Wednesday, May 4, 2022 12:35 PM
To: Open MPI Users
Cc: George Bosilca
Subject: Re: [OMPI users] mpirun hangs on m1 mac w openmpi-4.1.3
I compiled a fresh copy of the 4.1.3 branch on my M1 laptop, and I can run both
MPI and non-MPI apps without any issues.
Try running `lldb mpirun -- -np 1 hos
/
>>>
>>> [scotts-mbp.3500.dhcp.###:05469] [[48286,0],0] Releasing job data for
>>> [INVALID]
>>>
>>> Can you recommend a way to find where mpirun gets stuck?
>>> Thanks!
>>> Scott
>>>
>>> On Wed, May 4, 2022 at 6:06 AM
t;
>> On Wed, May 4, 2022 at 6:06 AM Jeff Squyres (jsquyres) <
>> jsquy...@cisco.com> wrote:
>>
>>> Are you able to use mpirun to launch a non-MPI application? E.g.:
>>>
>>> mpirun -np 2 hostname
>>>
>>> And if that works, can you r
;hello world" and
>> "ring" programs)? E.g.:
>>
>> cd examples
>> make
>> mpirun -np 4 hello_c
>> mpirun -np 4 ring_c
>>
>> --
>> Jeff Squyres
>> jsquy...@cisco.com
>>
>>
>
gt;
> cd examples
> make
> mpirun -np 4 hello_c
> mpirun -np 4 ring_c
>
> --
> Jeff Squyres
> jsquy...@cisco.com
>
>
> From: users on behalf of Scott Sayres
> via users
> Sent: Tuesday, May 3, 2022 1:07 PM
>
ples
make
mpirun -np 4 hello_c
mpirun -np 4 ring_c
--
Jeff Squyres
jsquy...@cisco.com
From: users on behalf of Scott Sayres via
users
Sent: Tuesday, May 3, 2022 1:07 PM
To: users@lists.open-mpi.org
Cc: Scott Sayres
Subject: [OMPI users] mpirun hangs on m1 ma
Hello,
I am new to openmpi, but would like to use it for ORCA calculations, and plan
to run codes on the 10 processors of my macbook pro. I installed this
manually and also through homebrew with similar results. I am able to
compile codes with mpicc and run them as native codes, but everything th
I'm having an issue with OpenMPI that just started today. A couple of days
ago everything was fine. I could run mpiexec/mpirun using --hostfile flag.
I didn't touch the system for those couple of days. I'm just messing around
learning MPI using C. These are simple programs from "Parallel Programmin
Hello,
I used Brice's workaround and now mpirun works well in all computers !
Thank you all for your help
Jorge
Le 14/11/2020 à 23:11, Brice Goglin via users a écrit :
Hello
The hwloc/X11 stuff is caused by OpenMPI using a hwloc that was built
with the GL backend enabled (in your case, it'
Hello
The hwloc/X11 stuff is caused by OpenMPI using a hwloc that was built
with the GL backend enabled (in your case, it's because package
libhwloc-plugins is installed). That backend is used for querying the
locality of X11 displays running on NVIDIA GPUs (using libxnvctrl). Does
running "lstopo
Sorry, if I execute mpirun in a *really *bare terminal, without X
Server running it works! but with an error message :
Invalid MIT-MAGIC-COOKIE-1 key
So the problem is related to X, but I have still no solution
Jorge
Le 14/11/2020 à 12:33, Jorge Silva via users a écrit :
Hello,
In spite
Hello,
In spite of the delay, I was not able to solve my problem. Thanks to
Joseph and Prentice for their interesting suggestions.
I uninstalled AppAmor (SElinux is not installed ) as suggested by
Prentice but there were no changes, mpirun sttill hangs.
The result of gdb stack trace is the
Hi Jorge,
Can you try to get a stack trace of mpirun using the following command
in a separate terminal?
sudo gdb -batch -ex "thread apply all bt" -p $(ps -C mpirun -o pid= |
head -n 1)
Maybe that will give some insight where mpirun is hanging.
Cheers,
Joseph
On 10/21/20 9:58 PM, Jorge SI
There's huge differences between Open MPI v2.1.1 and v4.0.3 (i.e., years of
development effort); it would be very hard to categorize them all; sorry!
What happens if you
mpirun -np 1 touch /tmp/foo
(Yes, you can run non-MPI apps through mpirun)
Is /tmp/foo created? (i.e., did the job run,
Hello Jeff,
The program is not executed, seems waits for something to connect with
(why twice ctrl-C ?)
jorge@gcp26:~/MPIRUN$ mpirun -np 1 touch /tmp/foo
^C^C
jorge@gcp26:~/MPIRUN$ ls -l /tmp/foo
ls: impossible d'accéder à '/tmp/foo': Aucun fichier ou dossier de ce type
no file is created.
Hi Jorge,
If a firewall is running on your nodes, I suggest you disable it and try again
Cheers,
Gilles
On Wed, Oct 21, 2020 at 5:50 AM Jorge SILVA via users
wrote:
>
> Hello,
>
> I installed kubuntu20.4.1 with openmpi 4.0.3-0ubuntu in two different
> computers in the standard way. Compiling w
Hello Gus,
Thank you for your answer.. Unfortunately my problem is much more
basic. I didn't try to run the program in both computers , but just to
run something in one computer. I just installed the new OS an openmpi in
two different computers, in the standard way, with the same result.
Hi Jorge
You may have an active firewall protecting either computer or both,
and preventing mpirun to start the connection.
Your /etc/hosts file may also not have the computer IP addresses.
You may also want to try the --hostfile option.
Likewise, the --verbose option may also help diagnose the pr
Hello,
I installed kubuntu20.4.1 with openmpi 4.0.3-0ubuntu in two different
computers in the standard way. Compiling with mpif90 works, but mpirun
hangs with no output in both systems. Even mpirun command without
parameters hangs and only twice ctrl-C typing can end the sleeping
program. Onl
Dear Patrick and all,
Finally I solved the problem.
I need to mount -t nfs the home directory of host to the node/home
And then I can run in the cluster
Thank you for your time.
Best regards
Ha Chi
On Thu, 4 Jun 2020 at 17:09, Patrick Bégou <
patrick.be...@legi.grenoble-inp.fr> wrote:
> Ha Chi,
Ha Chi,
first running MPI applications as root in not a good idea. You must
create users in your rocks cluster without admin rights for all that is
not system management.
Let me know a little more about how you launch this:
1) Do you run "mpirun" from the rocks frontend or from a node ?
2) Ok fro
Dear Patrick,
Thanks so much for your reply,
Yes, we use ssh to log on the node. From the frontend, we can ssh to the
nodes without password.
the mpirun --version in all 3 nodes are identical, openmpi 2.1.1, and same
place when testing with "whereis mpirun"
So is there any problem with mpirun causi
Hi Ha Chi
do you use a batch scheduler with Rocks Cluster or do you log on the
node with ssh ?
If ssh, can you check that you can ssh from one node to the other
without password ?
Ping just says the network is alive, not that you can connect.
Patrick
Le 04/06/2020 à 09:06, Hà Chi Nguyễn Nhật vi
Dear Open MPI users,
Please help me to find the solution for the problem using mpirun with a
ROCK cluster, 3 nodes. I use the command:
mpirun -np 12 --machinefile machinefile.txt --allow-run-as-root ./wrf.exe
But mpirun was unable to access other nodes (as the below photo). But
actually I checked
I hope this replies correctly. I previously had a problem with replies.
Anyhow, thank you for the advice. It turns out NUMA was disabled in the BIOS.
All other nodes showed 2 NUMA nodes but node125 showed 1 NUMA node. I was able
to see this by diffing lscpu on node125 and another node. Afte
Are you SURE node125 is identical to the others?
systems can boot up and disable DIMMs for instance.
I would log on there and runfreelscpu lspci dmidecode
Take those outputs and run a diff against outputs from a known good node
Also hwloc/lstopo might show some difference?
On Thu, 2 A
I'm getting the following error with openmpi/3.1.4 and openmpi/3.1.6 compiled
with intel/19.5 (openmpi/2 and openmpi/4 do not exhibit the problem). When I
run 'mpirun -display-devel-allocation hostname' over 2 nodes including node125
of our cluster, I get an error stating there are not enough s
I'm afraid the short answer is "no" - there is no way to do that today.
> On Mar 30, 2020, at 1:45 PM, Jean-Baptiste Skutnik via users
> wrote:
>
> Hello,
>
> I am writing a wrapper around `mpirun` which requires pre-processing of the
> user's program. To achieve this, I need to isolate the
Hello,
I am writing a wrapper around `mpirun` which requires pre-processing of the
user's program. To achieve this, I need to isolate the program from the
`mpirun` arguments on the command-line. The manual describes the program as:
```
The program executable. This is identified as the first
no
On Nov 1, 2019, at 10:14 AM, Reuti
mailto:re...@staff.uni-marburg.de>> wrote:
For the most part, this whole thing needs to get documented.
Especially that the colon is a disallowed character in the directory name. Any
suffix :foo will just be removed AFAICS without any error output about foo
b
> Am 01.11.2019 um 14:46 schrieb Jeff Squyres (jsquyres) via users
> :
>
> On Nov 1, 2019, at 9:34 AM, Jeff Squyres (jsquyres) via users
> wrote:
>>
>>> Point to make: it would be nice to have an option to suppress the output on
>>> stdout and/or stderr when output redirection to file is re
On Nov 1, 2019, at 9:34 AM, Jeff Squyres (jsquyres) via users
wrote:
>
>> Point to make: it would be nice to have an option to suppress the output on
>> stdout and/or stderr when output redirection to file is requested. In my
>> case, having stdout still visible on the terminal is desirable bu
On Oct 31, 2019, at 6:43 PM, Joseph Schuchart via users
wrote:
>
> Just to throw in my $0.02: I recently found that the output to stdout/stderr
> may not be desirable: in an application that writes a lot of log data to
> stderr on all ranks, stdout was significantly slower than the files I
>
Joseph,
I had to use the absolute path of the fork agent.
I may have misunderstood your request.
Now it seems you want to have each task stderr redirected to a unique file but
not to (duplicated) to mpirun stderr. Is that right?
If so, instead of the --output-filename option, you can do it "manu
Gilles,
Thanks for your suggestions! I just tried both of them, see below:
On 11/1/19 1:15 AM, Gilles Gouaillardet via users wrote:
Joseph,
you can achieve this via an agent (and it works with DDT too)
For example, the nostderr script below redirects each MPI task's stderr
to /dev/null (so
Joseph,
you can achieve this via an agent (and it works with DDT too)
For example, the nostderr script below redirects each MPI task's stderr
to /dev/null (so it is not forwarded to mpirun)
$ cat nostderr
#!/bin/sh
exec 2> /dev/null
exec "$@"
and then you can simply
$ mpirun --mca or
On 10/30/19 2:06 AM, Jeff Squyres (jsquyres) via users wrote:
Oh, did the prior behavior *only* output to the file and not to
stdout/stderr? Huh.
I guess a workaround for that would be:
mpirun ... > /dev/null
Just to throw in my $0.02: I recently found that the output to
stdout/std
Thanks Jeff.
“:nojobid” worked well for me and helps me remove 1 extra level of hierarchy
for log files.
Regards
Vipul
From: Jeff Squyres (jsquyres) [mailto:jsquy...@cisco.com]
Sent: Thursday, October 31, 2019 6:21 PM
To: Kulshrestha, Vipul
Cc: Open MPI User's List
Subject: Re: [OMPI
On Oct 30, 2019, at 2:16 PM, Kulshrestha, Vipul
mailto:vipul_kulshres...@mentor.com>> wrote:
Given that this is an intended behavior, I have a couple of follow up questions:
1. What is the purpose of the directory “1” that gets created currently?
(in /app.log/1/rank./stdout ) Is this hard
]
Sent: Tuesday, October 29, 2019 9:07 PM
To: Open MPI User's List
Cc: Kulshrestha, Vipul
Subject: Re: [OMPI users] mpirun --output-filename behavior
On Oct 29, 2019, at 7:30 PM, Kulshrestha, Vipul via users
mailto:users@lists.open-mpi.org>> wrote:
Hi,
We recently shifted from openM
On Oct 29, 2019, at 7:30 PM, Kulshrestha, Vipul via users
mailto:users@lists.open-mpi.org>> wrote:
Hi,
We recently shifted from openMPI 2.0.1 to 4.0.1 and are seeing an important
behavior change with respect to above option.
We invoke mpirun as
% mpirun –output-filename /app.log –np
With 2
Hi,
We recently shifted from openMPI 2.0.1 to 4.0.1 and are seeing an important
behavior change with respect to above option.
We invoke mpirun as
% mpirun -output-filename /app.log -np
With 2.0.1, the above produced /app.log. file for stdout of
the application, where is the rank of the pro
Ummm…looks like you have a problem in your input deck to that application. Not
sure what we can say about it…
> On Sep 28, 2018, at 9:47 AM, Zeinab Salah wrote:
>
> Hi everyone,
> I use openmpi-3.0.2 and I want to run chimere model with 8 processors, but in
> the step of parallel mode, the ru
Hi everyone,
I use openmpi-3.0.2 and I want to run chimere model with 8 processors, but
in the step of parallel mode, the run stopped with the following error
message,
Please could you help me?
Thank you in advance
Zeinab
+++ CHIMERE RUNNING IN PARALLEL MODE +++
MPI SUB-DOMAINS
There can be lots of reasons that this happens. Can you send all the
information listed here?
https://www.open-mpi.org/community/help/
> On Aug 15, 2018, at 10:55 AM, Mota, Thyago wrote:
>
> Hello.
>
> I have openmpi 2.0.4 installed on a Cent OS 7. When I try to run "mpirun" it
> hang
Hello.
I have openmpi 2.0.4 installed on a Cent OS 7. When I try to run "mpirun"
it *hangs*. Below is the output I get using the debug option:
$ mpirun -d
[elm:07778] procdir: /tmp/openmpi-sessions-551034197@elm_0/12011/0/0
[elm:07778] jobdir: /tmp/openmpi-sessions-551034197@elm_0/12011/0
[elm
A... thanks Gilles. That makes sense. I was stuck thinking there was
an ssh problem on rank 0; it never occurred to me mpirun was doing
something clever there and that those ssh errors were from a different
instance altogether.
It's no problem to put my private key on all instances - I'll go
Adam,
by default, when more than 64 hosts are involved, mpirun uses a tree
spawn in order to remote launch the orted daemons.
That means you have two options here :
- allow all compute nodes to ssh each other (e.g. the ssh private key
of *all* the nodes should be in *all* the authorized_keys
-
I'm running OpenMPI 2.1.0, built from source, on RHEL 7. I'm using the
default ssh-based launcher, where I have my private ssh key on rank 0 and
the associated public key on all ranks. I create a hosts file with a list
of unique IPs, with the host that I'm running mpirun from on the first
line, a
All solved and now works well! The culprit was the lost line in the
"maui.cfg" file:
JOBNODEMATCHPOLICY EXACTNODE
The default value for this variable is EXACTPROC and, in its presence, Maui
completely ignores the "-l nodes=N:ppn=M" PBS instruction and allocates
the first M available cores inside
All solved and now works well! The culprit was the lost line in the
"maui.cfg" file:
JOBNODEMATCHPOLICY EXACTNODE
The default value for this variable is EXACTPROC and, in its presence, Maui
completely ignores the "-l nodes=N:ppn=M" PBS instruction and allocates
the first M available cores inside
Thanks!
In fact there should be a problem with Maui's node allocation setting. I
have checked the $PBS_NODEFILE contents (this is also may be seen with
"qstat -n1"): while the default Torque scheduler correctly allocates one
slot on node1 and another slot on node2, in case of Maui I always see tha
sounds to me like your maui scheduler didn’t provide any allocated slots on the
nodes - did you check $PBS_NODEFILE?
> On Aug 9, 2017, at 12:41 PM, A M wrote:
>
>
> Hello,
>
> I have just ran into a strange issue with "mpirun". Here is what happened:
>
> I successfully installed Torque 6.1.1
Hello,
I have just ran into a strange issue with "mpirun". Here is what happened:
I successfully installed Torque 6.1.1.1 with the plain pbs_sched on a
minimal set of 2 IB nodes. Then I added openmpi 2.1.1 compiled with verbs
and tm, and have verified that mpirun works as it should with a small
"
Thanks Gilles - I appreciate all the detail.
Ahh, that's great that Open MPI now supports specifying an ssh port simply
through the hostfile. That'll make things a little simpler when I have
that use case in the future.
Oh of course - that makes sense that Open MPI requires TCP ports too rather
Adam,
there are several things here
with an up-to-date master, you can specify an alternate ssh port via a
hostfile
see https://github.com/open-mpi/ompi/issues/2224
Open MPI requires more than just ssh.
- remote nodes (orted) need to call back mpirun (oob/tcp)
- nodes (MPI tasks) need t
I'm trying to use OpenMPI 1.10.4 to communicate between two Docker
containers running on two different physical machines. Docker doesn't have
much to do with my question (unless someone has a suggestion for a better
way to do what I'm trying to :o) )... each Docker container is running an
OpenSSH
k..Thank you all.
That has solved.
On Fri, Nov 4, 2016 at 8:24 PM, r...@open-mpi.org wrote:
> All true - but I reiterate. The source of the problem is that the
> "--map-by node” on the cmd line must come *before* your application.
> Otherwise, none of these suggestions will help.
>
> > On Nov 4
All true - but I reiterate. The source of the problem is that the "--map-by
node” on the cmd line must come *before* your application. Otherwise, none of
these suggestions will help.
> On Nov 4, 2016, at 6:52 AM, Jeff Squyres (jsquyres)
> wrote:
>
> In your case, using slots or --npernode or
In your case, using slots or --npernode or --map-by node will result in the
same distribution of processes because you're only launching 1 process per node
(a.k.a. "1ppn").
They have more pronounced differences when you're launching more than 1ppn.
Let's take a step back: you should know that O
As long as you run 3 MPI tasks, both options will produce the same mapping.
If you want to run up to 12 tasks, then --map-by node is the way to go
Mahesh Nanavalla wrote:
>s...
>
>
>Thanks for responding me.
>
>i have solved that as below by limiting slots in hostfile
>
>
>root@OpenWrt:~#
Mahesh,
Depending what you are trying to accomplish, might using the mpirun option
-pernode -o- --pernode
work for you? That requests that only one process be spawned per
available node.
We generally use this for hybrid codes, where the single process will
spawn threads to the remaining proc
s...
Thanks for responding me.
i have solved that as below by limiting* slots in hostfile*
root@OpenWrt:~# cat myhostfile
root@10.73.145.1 slots=1
root@10.74.25.1 slots=1
root@10.74.46.1 slots=1
I want the difference between the *slots* limiting in myhostfile and
runnig *--map-by
node
My apologies - the problem is that you list the option _after_ your executable
name, and so we think it is an argument for your executable. You need to list
the option _before_ your executable on the cmd line
> On Nov 4, 2016, at 4:44 AM, Mahesh Nanavalla
> wrote:
>
> Thanks for reply,
>
>
Thanks for reply,
But,with space also not running on one process one each node
root@OpenWrt:~# /usr/bin/mpirun --allow-run-as-root -np 3 --hostfile
myhostfile /usr/bin/openmpiWiFiBulb --map-by node
And
If use like this it,s working fine(running one process on each node)
*/root@OpenWrt:~#/usr/bi
you mistyped the option - it is “--map-by node”. Note the space between “by”
and “node” - you had typed it with a “-“ instead of a “space”
> On Nov 4, 2016, at 4:28 AM, Mahesh Nanavalla
> wrote:
>
> Hi all,
>
> I am using openmpi-1.10.3,using quad core processor(node).
>
> I am running 3 pr
Hi all,
I am using openmpi-1.10.3,using quad core processor(node).
I am running 3 processes on three nodes(provided by hostfile) each node
process is limited by --map-by-node as below
*root@OpenWrt:~# /usr/bin/mpirun --allow-run-as-root -np 3 --hostfile
myhostfile /usr/bin/openmpiWiFiBulb --map
On 16 October 2016 at 14:50, Gilles Gouaillardet
wrote:
> Out of curiosity, why do you specify both --hostfile and -H ?
> Do you observe the same behavior without --hostfile ~/.mpihosts ?
When I specify only -H like so:
mpirun -H localhost -np 1 prog1 : -H A.lan -np 4 prog2 : -H B.lan -np 4 pro
Out of curiosity, why do you specify both --hostfile and -H ?
Do you observe the same behavior without --hostfile ~/.mpihosts ?
Also, do you have at least 4 cores on both A.lan and B.lan ?
Cheers,
Gilles
On Sunday, October 16, 2016, MM wrote:
> Hi,
>
> openmpi 1.10.3
>
> this call:
>
> mpirun
Hi,
openmpi 1.10.3
this call:
mpirun --hostfile ~/.mpihosts -H localhost -np 1 prog1 : -H A.lan -np
4 prog2 : -H B.lan -np 4 prog2
works, yet this one:
mpirun --hostfile ~/.mpihosts --app ~/.mpiapp
doesn't. where ~/.mpiapp
-H localhost -np 1 prog1
-H A.lan -np 4 prog2
-H B.lan -np 4 prog2
thanks! Glad to help.
best,
David Schneider
SLAC/LCLS
From: users [users-boun...@lists.open-mpi.org] on behalf of Reuti
[re...@staff.uni-marburg.de]
Sent: Friday, August 12, 2016 12:00 PM
To: Open MPI Users
Subject: Re: [OMPI users] mpirun won't
defensive practice, but it is more cumbersome, the actually path looks
>>
>> mpirun -n 1 $PWD/arch/x86_64-rhel7-gcc48-opt/bin/psana
>>
>> best,
>>
>> David Schneider
>> SLAC/LCLS
>>
>> From: users
na
>
> best,
>
> David Schneider
> SLAC/LCLS
>
> From: users [users-boun...@lists.open-mpi.org
> <mailto:users-boun...@lists.open-mpi.org>] on behalf of Phil Regier
> [preg...@penguincomputing.com <mailto:preg...@penguincomput
n -n 1 $PWD/arch/x86_64-rhel7-gcc48-opt/bin/psana
>
> best,
>
> David Schneider
> SLAC/LCLS
>
> From: users [users-boun...@lists.open-mpi.org] on behalf of Phil Regier [
> preg...@penguincomputing.com]
> Sent: Friday, July 29, 2016 5:12 PM
> To: Open MPI Users
> Subject
> David Schneider
> SLAC/LCLS
>
> From: users [users-boun...@lists.open-mpi.org] on behalf of Ralph Castain
> [r...@open-mpi.org]
> Sent: Friday, July 29, 2016 5:19 PM
> To: Open MPI Users
> Subject: Re: [OMPI users] mpirun won't find programs from the PATH
> environ
Open MPI Users
Subject: Re: [OMPI users] mpirun won't find programs from the PATH environment
variable that are in directories that are relative paths
Typical practice would be to put a ./myprogram in there to avoid any possible
confusion with a “myprogram” sitting in your $PATH. We should
/LCLS
From: users [users-boun...@lists.open-mpi.org] on behalf of Phil Regier
[preg...@penguincomputing.com]
Sent: Friday, July 29, 2016 5:12 PM
To: Open MPI Users
Subject: Re: [OMPI users] mpirun won't find programs from the PATH environment
variable t
Typical practice would be to put a ./myprogram in there to avoid any possible
confusion with a “myprogram” sitting in your $PATH. We should search the PATH
to find your executable, but the issue might be that it isn’t your PATH on a
remote node.
So the question is: are you launching strictly lo
I might be three steps behind you here, but does "mpirun pwd" show
that all your launched processes are running in the same directory as the
mpirun command? I assume that "mpirun env" would show that your
PATH variable is being passed along correctly, since you don't have any
problems with absol
I am finding, on linux, rhel7, with openmpi 1.8.8 and 1.10.3, that mpirun won't
find apps that are specified on a relative path, i.e, if I have
PATH=dir/bin
and I am in a directory which has dir/bin as a subdirectory, and an executable
bir/bin/myprogram, I can't do
mpirun myprogram
I get the
Afraid I have no brilliant ideas to offer - I’m not seeing that problem. It
usually indicates that the orte_schizo plugin is being pulled from an incorrect
location. You might just look in your install directory and ensure that the
plugin is there. Also ensure that your install lib is at the fro
Ive also blown away the install directory and did a complete reinstall in
case there was something old left in the directory.
-Nathan
On Tue, Jul 19, 2016 at 2:21 PM, Nathaniel Graham
wrote:
> The prefix location has to be there. Otherwise ompi attempts to install
> to a read only directory.
>
The prefix location has to be there. Otherwise ompi attempts to install to
a read only directory.
I have the install bin directory added to my path and the lib directory
added to the LD_LIBRARY_PATH.
When I run: which mpirun it is pointing to the expected place.
-Nathan
On Tue, Jul 19, 2016 at
Sounds to me like you have a confused build - I’d whack your prefix location
and do a “make install” again
> On Jul 19, 2016, at 1:04 PM, Nathaniel Graham wrote:
>
> Hello,
>
> I am trying to run the OSU tests for some results for a poster, but I am
> getting the following error:
>
> mpi
Hello,
I am trying to run the OSU tests for some results for a poster, but I am
getting the following error:
mpirun: Symbol `orte_schizo' has different size in shared object,
consider re-linking
I am building off master with gcc on Red Hat Enterprise Linux Server
release 6.7.
My config comm
Andrea,
On top of what Ralph just wrote, you might want to upgrade OpenMPI to
the latest stable version (1.10.3)
1.6.5 is pretty antique and is no more maintained.
the message indicates that one process died, and so many things could
cause a process crash.
(since the crash occurs only wi
Try running one of the OMPI example codes and verify that things run correctly
if N > 25. I suspect you have an error in your code that causes it to fail if
its rank is > 25.
> On Jul 7, 2016, at 2:49 PM, Alberti, Andrea wrote:
>
> Hi,
>
> my name is Andrea and I am a new openMPI user.
>
>
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