I wonder if there might be an issue with that file. I think that others have suggested that sometimes saving a corrupted file as a different name might help? I would suggest checking with Waters if that "0 k" size does indeed represent a problem.
In the meanwhile, can you try another one of your own files? However, I just noticed-- are you actually working with Thermo files? The Thermo files (like the Orbitrap one that you downloaded) are a completely different format that Waters. Thermo files should be converted with the "readw" converter, or, you can try the ProteoWizard project's msconvert program (included in the TPP or a possibly newer version from their website). Natalie On Jun 25, 2009, at 10:44 AM, liho2 wrote: > > Hi Natalie, > > One thing I noticed is that under "Please choose file(s)" menu, all > the .raw directory file size is recognized as 0 k. On the other hand, > the Orbitrap .RAW file that I downloaded from MaxQuant site can be > see with the right size. > > > Hong > > > On Jun 24, 5:46 pm, Natalie Tasman <[email protected]> > wrote: >> Hello, >> >> First, you might want to check that the file extention is >> indeed .raw >> and not .RAW. Capitalization might make a difference. >> >> Can you open this file in the Waters MassLynx application on the same >> computer? This must be installed in order for the converter >> (massWolf) to work properly. >> >> Natalie >> >> On Jun 24, 2009, at 2:39 PM, Hong wrote: >> >> >> >> >> >>> Hi there, >> >>> I am new to TPP. I have trouble converting the MassLynx .RAW >>> directory >>> with mzXML. I got the following status report message. What do I >>> need >>> to change to get it work? I greatly appreciate your inputs. >> >>> Hong Li >>> NJ Med School >> >>> massWolf -v --mzXML c:/Inetpub/wwwroot/ISB/data/hilo08.raw >> >>> Settings: >>> centroid scans: 0 >>> compress scans: 0 >>> verbose mode: 1 >>> lockspray: 1 >>> MS^E: 0 >>> threshold: 0 >>> mzML mode: 0 >>> mzXML mode: 1 >>> input filename: c:/Inetpub/wwwroot/ISB/data/hilo08.raw >>> output filename: c:/Inetpub/wwwroot/ISB/data/hilo08.mzXML >>> output file as gzip: 0 >> >>> Command FAILED > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
