Hi Bernard, What is TD and TZ? MassLynx doesn't provide centroiding capability so MassWolf has a custom centroiding algorithm. I haven't seen any comprehensive comparisons between that custom algorithm and the MaxEnt algorithm available from ProteinLynx Global Server (which is not programmatically accessible even if you have access to PLGS!).
-Matt Bernt wrote: > Hi Natalie, > > I'm also currently trying out MassWolf 4.2.1......it works with TD and > TZ as well, although TD appears to be a better option at generating > smaller mzxml files. But the centroiding function doesn't seem to be > working. It gives a "Warning: using EXPERIMENTAL centroiding > functionality" error msg in command prompt and Windows pops up a > "masswolf.exe has encountered a problem and needs to close" error > report. Is the centroiding function still in the process of > development? > > > Bernard > > > On Jun 25, 5:46 am, Natalie Tasman <[email protected]> > wrote: > >> Hello, >> >> First, you might want to check that the file extention is indeed .raw >> and not .RAW. Capitalization might make a difference. >> >> Can you open this file in the Waters MassLynx application on the same >> computer? This must be installed in order for the converter >> (massWolf) to work properly. >> >> Natalie >> >> On Jun 24, 2009, at 2:39 PM, Hong wrote: >> >> >> >> >>> Hi there, >>> >>> I am new to TPP. I have trouble converting the MassLynx .RAW directory >>> with mzXML. I got the following status report message. What do I need >>> to change to get it work? I greatly appreciate your inputs. >>> >>> Hong Li >>> NJ Med School >>> >>> massWolf -v --mzXML c:/Inetpub/wwwroot/ISB/data/hilo08.raw >>> >>> Settings: >>> centroid scans: 0 >>> compress scans: 0 >>> verbose mode: 1 >>> lockspray: 1 >>> MS^E: 0 >>> threshold: 0 >>> mzML mode: 0 >>> mzXML mode: 1 >>> input filename: c:/Inetpub/wwwroot/ISB/data/hilo08.raw >>> output filename: c:/Inetpub/wwwroot/ISB/data/hilo08.mzXML >>> output file as gzip: 0 >>> >>> Command FAILED >>> > > > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
