"run_in" is just a little program that runs one or more commands in the indicated directory. For example "run_in c:\foo; bar.exe; baz.exe" performs "cd c:\foo" then runs "bar.exe" then "baz.exe". It exists to help with linux-oriented multipart command lines in the GUI, statements like "cd c:foo; bar.exe; baz.exe" (we just swap "run_in" for "cd" on the windows installation).
Anyway, that's what it's for - why it doesn't work for you is a mystery. Perhaps it's a path issue: how does the command line c:\Inetpub\tpp-bin\run_in c:/Inetpub/wwwroot/ISB/data/17mix/tandem; c:\Inetpub\tpp-bin\tandem c:/Inetpub/wwwroot/ISB/data/17mix/tandem/OR20091211_18mix_01.tandem.params work for you (that is, with full path to run_in specified)? On Wed, Mar 10, 2010 at 1:21 PM, Lik Wee Lee <[email protected]>wrote: > Hi, > > When I tried to do a xtandem search in the TPP petunia interface, > I encountered the problem: > > # Commands for session TYBEEDEHS on Wed Mar 10 13:13:38 2010 > # BEGIN COMMAND BLOCK > ###### BEGIN Command Execution ###### > > [Wed Mar 10 13:13:38 2010] EXECUTING: run_in > c:/Inetpub/wwwroot/ISB/data/17mix/tandem; c:\Inetpub\tpp-bin\tandem > c:/Inetpub/wwwroot/ISB/data/17mix/tandem/OR20091211_18mix_01.tandem.params > OUTPUT: > > command "c:\Inetpub\tpp-bin\tandem > c:/Inetpub/wwwroot/ISB/data/17mix/tandem/OR20091211_18mix_01.tandem.params" > failed: Unknown error > > END OUTPUT > RETURN CODE:65280 > ###### End Command Execution ###### > # All finished at Wed Mar 10 13:13:38 2010 > # END COMMAND BLOCK > > > Does anyone have any ideas why this occur? > However, the search was performed successfully if I did it by command line: > > c:\Inetpub\tpp-bin\tandem > c:/Inetpub/wwwroot/ISB/data/17mix/tandem/OR20091211_18mix_01.tandem.params > > If I try > > run_in c:/Inetpub/wwwroot/ISB/data/17mix/tandem; c:\Inetpub\tpp-bin\tandem > c:/Inetpub/wwwroot/ISB/data/17mix/tandem/OR20091211_18mix_01.tandem.params > > it says command failed: Unknown error. > > I have ActivePerl 5.8.9 build 827 and TPP version 4.3.1 installed on > Windows XP SP3. > > Thanks, > Lik Wee > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
