Hi Brian, The full path still gives command "..." failed: unknown error.
I tried "run_in c:" and didn't get any output. But if I try "run_in c:\; dir", I get: command "dir" failed: Unknown error. Could it be I previously had installed Perl 5.10? I uninstalled it and then installed Perl 5.8.9 followed by tpp 4.3.1. Lik Wee On Wed, Mar 10, 2010 at 1:34 PM, Brian Pratt <[email protected]>wrote: > "run_in" is just a little program that runs one or more commands in the > indicated directory. For example "run_in c:\foo; bar.exe; baz.exe" performs > "cd c:\foo" then runs "bar.exe" then "baz.exe". It exists to help with > linux-oriented multipart command lines in the GUI, statements like "cd > c:foo; bar.exe; baz.exe" (we just swap "run_in" for "cd" on the windows > installation). > > Anyway, that's what it's for - why it doesn't work for you is a mystery. > Perhaps it's a path issue: how does the command line > > c:\Inetpub\tpp-bin\run_in c:/Inetpub/wwwroot/ISB/data/17mix/tandem; > c:\Inetpub\tpp-bin\tandem > c:/Inetpub/wwwroot/ISB/data/17mix/tandem/OR20091211_18mix_01.tandem.params > > work for you (that is, with full path to run_in specified)? > > On Wed, Mar 10, 2010 at 1:21 PM, Lik Wee Lee <[email protected]>wrote: > >> Hi, >> >> When I tried to do a xtandem search in the TPP petunia interface, >> I encountered the problem: >> >> # Commands for session TYBEEDEHS on Wed Mar 10 13:13:38 2010 >> # BEGIN COMMAND BLOCK >> ###### BEGIN Command Execution ###### >> >> [Wed Mar 10 13:13:38 2010] EXECUTING: run_in >> c:/Inetpub/wwwroot/ISB/data/17mix/tandem; c:\Inetpub\tpp-bin\tandem >> c:/Inetpub/wwwroot/ISB/data/17mix/tandem/OR20091211_18mix_01.tandem.params >> OUTPUT: >> >> command "c:\Inetpub\tpp-bin\tandem >> c:/Inetpub/wwwroot/ISB/data/17mix/tandem/OR20091211_18mix_01.tandem.params" >> failed: Unknown error >> >> >> END OUTPUT >> RETURN CODE:65280 >> ###### End Command Execution ###### >> # All finished at Wed Mar 10 13:13:38 2010 >> # END COMMAND BLOCK >> >> >> Does anyone have any ideas why this occur? >> However, the search was performed successfully if I did it by command >> line: >> >> c:\Inetpub\tpp-bin\tandem >> c:/Inetpub/wwwroot/ISB/data/17mix/tandem/OR20091211_18mix_01.tandem.params >> >> If I try >> >> run_in c:/Inetpub/wwwroot/ISB/data/17mix/tandem; c:\Inetpub\tpp-bin\tandem >> c:/Inetpub/wwwroot/ISB/data/17mix/tandem/OR20091211_18mix_01.tandem.params >> >> it says command failed: Unknown error. >> >> I have ActivePerl 5.8.9 build 827 and TPP version 4.3.1 installed on >> Windows XP SP3. >> >> Thanks, >> Lik Wee >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To post to this group, send email to [email protected]. >> To unsubscribe from this group, send email to >> [email protected]<spctools-discuss%[email protected]> >> . >> For more options, visit this group at >> http://groups.google.com/group/spctools-discuss?hl=en. >> > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
