I've been running some of the TPP tools under wine, but I'm trying now
to run them as Linux programs, or more specifically, Ubuntu 10.04. I
was following the instructions on the Wiki page for installing TPP
under Linux (http://tools.proteomecenter.org/wiki/index.php?
title=TPP_4.2.1:_Installing_on_Ubuntu_9.04) but I ran into a problem
after the second 'make -j5':
In file included from saxgamlhandler.h:140,
from loadmspectrum.h:235,
from loadmspectrum.cpp:143:
saxhandler.h:240: error: ‘uint32_t’ has not been declared
saxhandler.h:241: error: ‘uint64_t’ does not name a type
make[3]: *** [linuxloadmspectrum.o] Error 1
make[3]: Leaving directory `/usr/local/src/tpp-4.2.1/extern/xtandem/
src'
make[2]: *** [default] Error 2
make[2]: Leaving directory `/usr/local/src/tpp-4.2.1/extern/xtandem/
src'
make[1]: *** [xtandem] Error 2
make[1]: Leaving directory `/usr/local/src/tpp-4.2.1/src'
make: *** [default] Error 2
I got this same error when I tried earlier to install X! Tandem by
itself, but trying to resolve it just got me into more problems.
Hoping I could just skip this, I did the next step in the
instructions, which was 'make install', but then I got into another
problem:
# Create Directories
mkdir -p /usr/local/apps/tpp/
mkdir -p /usr/local/apps/tpp/bin/
mkdir -p /usr/local/apps/tpp/cgi-bin/
mkdir -p /usr/local/apps/tpp/schema/
# Copy all source executables and configuration files to their
location
cp -f /usr/local/src/tpp-4.2.1/src/../build/linux/
ASAPRatioPeptideParser /usr/local/apps/tpp/bin/
cp: cannot stat `/usr/local/src/tpp-4.2.1/src/../build/linux/
ASAPRatioPeptideParser': No such file or directory
make: *** [install-linux-xml] Error 1
I'm not sure if this problem is related or not, but I'm really not
sure how to fix it. Has anyone else come across this problem?
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