I have not moved on to testing Ubuntu 10, but I have tested the latest release on 8 and 9 (.04 and .10), and have scripts for installing all required prerequisites on those systems (and some others) under svn trunk tpp's "installer_linux" directory. Start by taking a look there.
Once you have the prerequisites ready, and have changed any installation directories you need in Makefile.config.incl, I would simply do "make" followed by "(sudo) make install" (sudo is optional depending on where you intend to install the software). For debugging your build, I would drop the "-j5" parallel job execution command, as it may make it more tricky to figure out where the error is actually coming from. Also, that tutorial is out of date, so I don't know that the specifics still apply (though the general steps of installing system prerequisites, deciding upon and configuring a webserver setup, and adjusting TPP build config all still apply in some form.) Best of luck and let us know how it goes, Natalie On Fri, May 14, 2010 at 10:17 AM, Jesse J <[email protected]>wrote: > I've been running some of the TPP tools under wine, but I'm trying now > to run them as Linux programs, or more specifically, Ubuntu 10.04. I > was following the instructions on the Wiki page for installing TPP > under Linux (http://tools.proteomecenter.org/wiki/index.php? > title=TPP_4.2.1:_Installing_on_Ubuntu_9.04) but I ran into a problem > after the second 'make -j5': > > In file included from saxgamlhandler.h:140, > from loadmspectrum.h:235, > from loadmspectrum.cpp:143: > saxhandler.h:240: error: ‘uint32_t’ has not been declared > saxhandler.h:241: error: ‘uint64_t’ does not name a type > make[3]: *** [linuxloadmspectrum.o] Error 1 > make[3]: Leaving directory `/usr/local/src/tpp-4.2.1/extern/xtandem/ > src' > make[2]: *** [default] Error 2 > make[2]: Leaving directory `/usr/local/src/tpp-4.2.1/extern/xtandem/ > src' > make[1]: *** [xtandem] Error 2 > make[1]: Leaving directory `/usr/local/src/tpp-4.2.1/src' > make: *** [default] Error 2 > > I got this same error when I tried earlier to install X! Tandem by > itself, but trying to resolve it just got me into more problems. > Hoping I could just skip this, I did the next step in the > instructions, which was 'make install', but then I got into another > problem: > > # Create Directories > mkdir -p /usr/local/apps/tpp/ > mkdir -p /usr/local/apps/tpp/bin/ > mkdir -p /usr/local/apps/tpp/cgi-bin/ > mkdir -p /usr/local/apps/tpp/schema/ > # Copy all source executables and configuration files to their > location > cp -f /usr/local/src/tpp-4.2.1/src/../build/linux/ > ASAPRatioPeptideParser /usr/local/apps/tpp/bin/ > cp: cannot stat `/usr/local/src/tpp-4.2.1/src/../build/linux/ > ASAPRatioPeptideParser': No such file or directory > make: *** [install-linux-xml] Error 1 > > I'm not sure if this problem is related or not, but I'm really not > sure how to fix it. Has anyone else come across this problem? > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
