Have you had a look at the trans_proteomic_pipeline\installer_linux
directory in the source code tree?  Those are the configuration
scripts we use on EC2, and for local continuous integration tests.

Brian

On Tue, May 18, 2010 at 2:40 AM, EricTan <[email protected]> wrote:
> Thanks for the information, Brian. I first tried running applications
> from Petunia but encountered permission issues. As I am happy running
> the applications commandline, I later thought of using Petunia just
> for viewing results. Peptide viewer does show me the results, but not
> with proper formatting.
>
> This is the same for some of the links. All these suggests that my
> configuration for Apache and possibly user permissions is incorrect.
> When installing TPP, I follow the instructions in
> http://tools.proteomecenter.org/wiki/index.php?title=TPP_4.2.1:_Installing_on_Ubuntu_9.04
> apart from the three changes I made. Does your Apache configuration
> differ from the one in the page I've just mentioned? Did you need to
> edit user permissions when you installed it on Ubuntu 8?
>
> Cheers
> Eric
>
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