It's good to know there is a fair number of people using TPP under Ubuntu. I've installed TPP 4.3.1 in Ubuntu 10.04 and 9.10 just about two weeks back. I tested the applications by going through the TPP Demo2009 tutorial (http://tools.proteomecenter.org/wiki/index.php? title=TPP_Demo2009). The files I edited to make TPP work are:
1) extern/xtandem/src/Makefile => Change GCC to 4_3, i.e. from "CXXFLAGS = -O2 -DGCC4 - DPLUGGABLE_SCORING $(OSFLAGS) $(ZLIB_INCL) -DREAD_GZIP -I ../../ gzstream $(PWIZ_MZML_FLAGS)" to "CXXFLAGS = -O2 -DGCC4_3 - DPLUGGABLE_SCORING $(OSFLAGS) $(ZLIB_INCL) -DREAD_GZIP -I ../../ gzstream $(PWIZ_MZML_FLAGS)". 2) extern/xtandem/src/saxhandler.h => Add "#include <stdint.h>", as mentioned by David. 3) extern/xtandem/src/stdafx.h => Change the includes within "#ifdef GCC4_3" && "#endif" to reflect: "#include <stdio.h>", "#include <stdlib.h>" and "#include <string.h>". => Ref: bill's reply on http://groups.google.com.sg/group/spctools-discuss/browse_thread/thread/ef67c1f2dfd696/. Reading this thread, it appears that adding "#include <stdint.h>" to extern/xtandem/src/saxhandler.h is all that is needed to get TPP working in Ubuntu. So I'm just sharing what I've done in case it helps someone else. To all the Ubuntu users out there, do you run TPP applications via commandline or via the Petunia web-interface? I can't quite get applications running from Petunia; I suspect it's my user / user group + permissions settings. After acquiring the result files of the TPP Demo2009 tutorial by running the applications commandline, I tried viewing the files using Petunia and had mixed successes. So I am wondering if anyone had gotten TPP running fully via Petunia on Ubuntu. I would certainly appreciate if you could shed some light on this. Cheers Eric -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
