I saw that thread before but didn't appear to be relevant. This error message is generated server side, it does not relate to which browser I am using.
On Jun 1, 11:05 pm, Brian Pratt <brian.pr...@insilicos.com> wrote: > This came up before: > > http://groups.google.com/group/spctools-discuss/browse_thread/thread/... > > although it's not clear if it was resolved. But you might have a look > at the thread and see if it helps. > > On Mon, May 31, 2010 at 4:35 AM, Eliza <blond...@googlemail.com> wrote: > > OK so I was able to figure out how how to set the PATH for the > > webserver user and eradicated that error. That still leaves me with > > the following error in the browser: > > > Unable to access xml file via webserver, so cannot check xml file for > > changes () > > Check webserver configuration if desired. > > (URL: undefined) > > > Suggestions on what I need to look at to fix this? > > > On May 24, 7:39 pm, Brian Pratt <brian.pr...@insilicos.com> wrote: > >> PATH = /usr/local/bin:/usr/bin:/bin > > >> Doesn't seem to include your TPP executables. You'll need to figure > >> out how to update that for the Apache process user. > > >> On Mon, May 24, 2010 at 12:39 AM, Eliza <blond...@googlemail.com> wrote: > >> > Here is the output (with some details removed) > > >> > SCRIPT_NAME = /tpp/cgi-bin/check_env.pl > >> > SERVER_NAME = servername > >> > SERVER_ADMIN = webmas...@localhost > >> > HTTP_ACCEPT_ENCODING = gzip,deflate > >> > HTTP_CONNECTION = keep-alive > >> > REQUEST_METHOD = GET > >> > HTTP_ACCEPT = text/html,application/xhtml+xml,application/xml;q=0.9,*/ > >> > *;q=0.8 > >> > SCRIPT_FILENAME = /usr/local/tpp/cgi-bin/check_env.pl > >> > SERVER_SOFTWARE = Apache/2.2.3 (Debian) PHP/5.2.0-8+etch16 > >> > HTTP_ACCEPT_CHARSET = ISO-8859-1,utf-8;q=0.7,*;q=0.7 > >> > QUERY_STRING = > >> > REMOTE_PORT = 3975 > >> > HTTP_USER_AGENT = Mozilla/5.0 (Windows; U; Windows NT 5.1; en-US; rv: > >> > 1.9.1.9) Gecko/20100315 Firefox/3.5.9 ( .NET CLR 3.5.30729) > >> > SERVER_PORT = 80 > >> > SERVER_SIGNATURE = > >> > Apache/2.2.3 (Debian) PHP/5.2.0-8+etch16 Server at server Port 80 > > >> > HTTP_ACCEPT_LANGUAGE = en-us,en;q=0.5 > >> > REMOTE_ADDR = xx.xx.xx.xx > >> > WEBSERVER_ROOT = /usr/local/tpp > >> > HTTP_KEEP_ALIVE = 300 > >> > SERVER_PROTOCOL = HTTP/1.1 > >> > PATH = /usr/local/bin:/usr/bin:/bin > >> > REQUEST_URI = /tpp/cgi-bin/check_env.pl > >> > GATEWAY_INTERFACE = CGI/1.1 > >> > SERVER_ADDR = 130.232.69.141 > >> > DOCUMENT_ROOT = /usr/local/tpp/html/ > >> > WEBSERVER_TMP = /usr/local/tpp/html/tmp > >> > HTTP_HOST = host > > >> > On May 21, 3:15 am, Brian Pratt <brian.pr...@insilicos.com> wrote: > >> >> PATH is of interest as well. Or you could just paste all the results > >> >> into a message to this list. > > >> >> On Thu, May 20, 2010 at 7:38 AM, Vishal Swaroop <vishal....@gmail.com> > >> >> wrote: > >> >> > As I have not configured TPP on linux so I am not sure if I will be of > >> >> > help.... but check WEBSERVER_ROOT and SCRIPT_FILENAME = <path to > >> >> > tppbin>/check_env.pl > >> >> > See, if <path to tppbin> in SCRIPT_FILENAME is set in apache > >> >> > configuration > >> >> > file httpd.conf. > >> >> > As per your post description, does it mean that you are able to login > >> >> > and > >> >> > run some of the process from gui, on what event/ click you get this > >> >> > error, > >> >> > which browser you are using ? > >> >> > Thanks > >> >> > On Thu, May 20, 2010 at 4:42 AM, Eliza <blond...@googlemail.com> > >> >> > wrote: > > >> >> >> The webserver is working fine, it is used to host a couple other > >> >> >> sites > >> >> >> and they aren't experiencing any issues :-) > > >> >> >> I ran check_env.pl but I am not sure what I should which values I > >> >> >> should be verifying, can you provide any advice here? > > >> >> >> On May 19, 12:01 am, Vishal Swaroop <vishal....@gmail.com> wrote: > >> >> >> > Hi Eliza, > > >> >> >> > Brian is right, it is difficult to debug through emails... > > >> >> >> > Though I have not configured it on linux but your issue seems to be > >> >> >> > related > >> >> >> > to environment setting (path for user, etc. as mentioned in 2nd. > >> >> >> > post) > > >> >> >> > - Check your apache httpd.conf file (should be somewhere under > >> >> >> > etc/apache...) and check if webserver is working (http://localhost) > >> >> >> > - You should also try checking > >> >> >> > http:///localhost/tpp/cgi-bin/check_env.pl , > >> >> >> > to check environment > > >> >> >> > Not sure if it will help but this is sample httpd.conf entry for > >> >> >> > webserver > >> >> >> > configured using cygwin... > > >> >> >> > ServerRoot "/usr" > >> >> >> > Listen 81 > >> >> >> > # > >> >> >> > # ISB-Tools Trans Proteomic Pipeline directive > >> >> >> > # > >> >> >> > ScriptLog /var/logs/apache2/cgi_log > >> >> >> > AddType text/html .shtml > >> >> >> > AddHandler server-parsed .shtml > >> >> >> > SetEnv WEBSERVER_ROOT /cygdrive/c/Inetpub/wwwroot/ > >> >> >> > SetEnv WEBSERVER_URLhttp://localhost:81/ > > >> >> >> > Alias /ISB/ "/cygdrive/c/Inetpub/wwwroot/ISB/" > >> >> >> > <Directory "/cygdrive/c/Inetpub/wwwroot/ISB/"> > >> >> >> > AllowOverride None > >> >> >> > Options Includes Indexes FollowSymLinks MultiViews > >> >> >> > Order allow,deny > >> >> >> > Allow from all > >> >> >> > </Directory> > > >> >> >> > Alias /tpp-bin/ "/cygdrive/c/Inetpub/tpp-bin/" > >> >> >> > <Directory "/cygdrive/c/Inetpub/tpp-bin/"> > >> >> >> > AllowOverride AuthConfig Limit > >> >> >> > Options ExecCGI Includes Indexes MultiViews > >> >> >> > AddHandler cgi-script .cgi .pl > >> >> >> > Order allow,deny > >> >> >> > Allow from all > >> >> >> > </Directory> > > >> >> >> > Thanks > >> >> >> > Vishal > > >> >> >> > On Tue, May 18, 2010 at 4:06 PM, Brian Pratt > >> >> >> > <brian.pr...@insilicos.com>wrote: > > >> >> >> > > I'm sorry you're having a hard time with it, but you just have > >> >> >> > > to get > >> >> >> > > in there and mess around with it, or find somebody locally who > >> >> >> > > will do > >> >> >> > > so for you. Getting a webserver configured on linux isn't > >> >> >> > > trivial, > >> >> >> > > unfortunately, and not really the kind of thing that can be > >> >> >> > > debugged > >> >> >> > > by email. > > >> >> >> > > Brian > > >> >> >> > > On Tue, May 18, 2010 at 6:52 AM, Eliza <blond...@googlemail.com> > >> >> >> > > wrote: > >> >> >> > > > OK well this is a shame that no one seems to be able to help > >> >> >> > > > on this > >> >> >> > > > one. It seems to me this is more of a problem with the way the > >> >> >> > > > application is architected than a problem with the system I > >> >> >> > > > run it > >> >> >> > > > on. It's a bit of a shame that I don't feel I can support > >> >> >> > > > running > >> >> >> > > > TPP > >> >> >> > > > in a Linux environment. > > >> >> >> > > > On Mar 23, 6:23 pm, Brian Pratt <brian.pr...@insilicos.com> > >> >> >> > > > wrote: > >> >> >> > > >> Start with the "tpp_hostname: command not found" message. The > >> >> >> > > >> solution > >> >> >> > > is a > >> >> >> > > >> combination of setting the PATH for the webserver user, and > >> >> >> > > >> customizing > >> >> >> > > your > >> >> >> > > >> tpp_gui_config.pl file to tell the GUI where you installed the > >> >> >> > > >> various > >> >> >> > > >> executables. > > >> >> >> > > >> Good luck, > > >> >> >> > > >> Brian > > >> >> >> > > >> On Tue, Mar 23, 2010 at 6:20 AM, Eliza > >> >> >> > > >> <blond...@googlemail.com> > >> >> >> > > >> wrote: > >> >> >> > > >> > I posted the thread > > >> >> >> > > >> > >http://groups.google.com/group/spctools-discuss/browse_thread/thread/. > >> >> >> > > .. > >> >> >> > > >> > back in January but didn't receive any responses so I am > >> >> >> > > >> > asking > >> >> >> > > >> > again > >> >> >> > > >> > if anybody can assist. > > >> >> >> > > >> > When trying to use the TPP GUI the webserver error log is > >> >> >> > > >> > filled > >> >> >> > > >> > with > >> >> >> > > >> > the following error message: > > >> >> >> > > >> > [Fri Jan 08 14:01:42 2010] [error] [client xxx.xxx.xx.xx] > >> >> >> > > >> > sh: > >> >> >> > > >> > tpp_hostname: command not found, referer: > > >> >> >> > >http://localhost/tpp/cgi-bin/tpp_gui.pl?Action=display&page=filebrowser > > >> >> >> > > >> > I am also seeing the same error message in the GUI: > > >> >> >> > > >> > Unable to access xml file via webserver, so cannot check > >> >> >> > > >> > xml file > >> >> >> > > >> > for > >> >> >> > > >> > changes () > >> >> >> > > >> > Check webserver configuration if desired. > >> >> >> > > >> > (URL: undefined) > > >> >> >> > > >> > Debian Etch TPP version 4.3. Suggestions on how to fix > >> >> >> > > >> > this? > > >> >> >> > > >> > -- > >> >> >> > > >> > You received this message because you are subscribed to the > >> >> >> > > >> > Google > >> >> >> > > Groups > >> >> >> > > >> > "spctools-discuss" group. > >> >> >> > > >> > To post to this group, send email to > >> >> >> > > spctools-disc...@googlegroups.com. > >> >> >> > > >> > To unsubscribe from this group, send email to > > >> >> >> > > >> > spctools-discuss+unsubscr...@googlegroups.com<spctools-discuss%2bunsubscr...@googlegroups.com> > > >> >> >> > > <spctools-discuss%2bunsubscr...@googlegroups.com<spctools-discuss%252bunsubscr...@googlegroups.com> > > >> >> >> > > >> > . > >> >> >> > > >> > For more options, visit this group at > >> >> >> > > >> >http://groups.google.com/group/spctools-discuss?hl=en. > > >> >> >> > > > -- > >> >> >> > > > You received this message because you are subscribed to the > >> >> >> > > > Google > >> >> >> > > > Groups > >> >> >> > > "spctools-discuss" group. > >> >> >> > > > To post to this group, send email to > >> >> >> > > > spctools-disc...@googlegroups.com. > >> >> >> > > > To unsubscribe from this group, send email to > > >> >> >> > > spctools-discuss+unsubscr...@googlegroups.com<spctools-discuss%2bunsubscr...@googlegroups.com> > >> >> >> > > . > >> >> >> > > > For more options, visit this group at > >> >> >> > >http://groups.google.com/group/spctools-discuss?hl=en. > > >> >> >> > > -- > >> >> >> > > You received this message because you are subscribed to the > >> >> >> > > Google > >> >> >> > > Groups > >> >> >> > > "spctools-discuss" group. > >> >> >> > > To post to this group, send email to > >> >> >> > > spctools-disc...@googlegroups.com. > >> >> >> > > To unsubscribe from this group, send email to > > >> >> >> > > spctools-discuss+unsubscr...@googlegroups.com<spctools-discuss%2bunsubscr...@googlegroups.com> > >> >> >> > > . > >> >> >> > > For more options, visit this group at > >> >> >> > >http://groups.google.com/group/spctools-discuss?hl=en. > > >> >> >> > -- > >> >> >> > You received this message because you are subscribed to the Google > >> >> >> > Groups "spctools-discuss" group. > >> >> >> > To post to this group, send email to > > ... > > read more » -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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