Here is the output (with some details removed) SCRIPT_NAME = /tpp/cgi-bin/check_env.pl SERVER_NAME = servername SERVER_ADMIN = webmas...@localhost HTTP_ACCEPT_ENCODING = gzip,deflate HTTP_CONNECTION = keep-alive REQUEST_METHOD = GET HTTP_ACCEPT = text/html,application/xhtml+xml,application/xml;q=0.9,*/ *;q=0.8 SCRIPT_FILENAME = /usr/local/tpp/cgi-bin/check_env.pl SERVER_SOFTWARE = Apache/2.2.3 (Debian) PHP/5.2.0-8+etch16 HTTP_ACCEPT_CHARSET = ISO-8859-1,utf-8;q=0.7,*;q=0.7 QUERY_STRING = REMOTE_PORT = 3975 HTTP_USER_AGENT = Mozilla/5.0 (Windows; U; Windows NT 5.1; en-US; rv: 1.9.1.9) Gecko/20100315 Firefox/3.5.9 ( .NET CLR 3.5.30729) SERVER_PORT = 80 SERVER_SIGNATURE = Apache/2.2.3 (Debian) PHP/5.2.0-8+etch16 Server at server Port 80
HTTP_ACCEPT_LANGUAGE = en-us,en;q=0.5 REMOTE_ADDR = xx.xx.xx.xx WEBSERVER_ROOT = /usr/local/tpp HTTP_KEEP_ALIVE = 300 SERVER_PROTOCOL = HTTP/1.1 PATH = /usr/local/bin:/usr/bin:/bin REQUEST_URI = /tpp/cgi-bin/check_env.pl GATEWAY_INTERFACE = CGI/1.1 SERVER_ADDR = 130.232.69.141 DOCUMENT_ROOT = /usr/local/tpp/html/ WEBSERVER_TMP = /usr/local/tpp/html/tmp HTTP_HOST = host On May 21, 3:15 am, Brian Pratt <[email protected]> wrote: > PATH is of interest as well. Or you could just paste all the results > into a message to this list. > > > > On Thu, May 20, 2010 at 7:38 AM, Vishal Swaroop <[email protected]> wrote: > > As I have not configured TPP on linux so I am not sure if I will be of > > help.... but check WEBSERVER_ROOT and SCRIPT_FILENAME = <path to > > tppbin>/check_env.pl > > See, if <path to tppbin> in SCRIPT_FILENAME is set in apache configuration > > file httpd.conf. > > As per your post description, does it mean that you are able to login and > > run some of the process from gui, on what event/ click you get this error, > > which browser you are using ? > > Thanks > > On Thu, May 20, 2010 at 4:42 AM, Eliza <[email protected]> wrote: > > >> The webserver is working fine, it is used to host a couple other sites > >> and they aren't experiencing any issues :-) > > >> I ran check_env.pl but I am not sure what I should which values I > >> should be verifying, can you provide any advice here? > > >> On May 19, 12:01 am, Vishal Swaroop <[email protected]> wrote: > >> > Hi Eliza, > > >> > Brian is right, it is difficult to debug through emails... > > >> > Though I have not configured it on linux but your issue seems to be > >> > related > >> > to environment setting (path for user, etc. as mentioned in 2nd. post) > > >> > - Check your apache httpd.conf file (should be somewhere under > >> > etc/apache...) and check if webserver is working (http://localhost) > >> > - You should also try checking > >> > http:///localhost/tpp/cgi-bin/check_env.pl , > >> > to check environment > > >> > Not sure if it will help but this is sample httpd.conf entry for > >> > webserver > >> > configured using cygwin... > > >> > ServerRoot "/usr" > >> > Listen 81 > >> > # > >> > # ISB-Tools Trans Proteomic Pipeline directive > >> > # > >> > ScriptLog /var/logs/apache2/cgi_log > >> > AddType text/html .shtml > >> > AddHandler server-parsed .shtml > >> > SetEnv WEBSERVER_ROOT /cygdrive/c/Inetpub/wwwroot/ > >> > SetEnv WEBSERVER_URLhttp://localhost:81/ > > >> > Alias /ISB/ "/cygdrive/c/Inetpub/wwwroot/ISB/" > >> > <Directory "/cygdrive/c/Inetpub/wwwroot/ISB/"> > >> > AllowOverride None > >> > Options Includes Indexes FollowSymLinks MultiViews > >> > Order allow,deny > >> > Allow from all > >> > </Directory> > > >> > Alias /tpp-bin/ "/cygdrive/c/Inetpub/tpp-bin/" > >> > <Directory "/cygdrive/c/Inetpub/tpp-bin/"> > >> > AllowOverride AuthConfig Limit > >> > Options ExecCGI Includes Indexes MultiViews > >> > AddHandler cgi-script .cgi .pl > >> > Order allow,deny > >> > Allow from all > >> > </Directory> > > >> > Thanks > >> > Vishal > > >> > On Tue, May 18, 2010 at 4:06 PM, Brian Pratt > >> > <[email protected]>wrote: > > >> > > I'm sorry you're having a hard time with it, but you just have to get > >> > > in there and mess around with it, or find somebody locally who will do > >> > > so for you. Getting a webserver configured on linux isn't trivial, > >> > > unfortunately, and not really the kind of thing that can be debugged > >> > > by email. > > >> > > Brian > > >> > > On Tue, May 18, 2010 at 6:52 AM, Eliza <[email protected]> > >> > > wrote: > >> > > > OK well this is a shame that no one seems to be able to help on this > >> > > > one. It seems to me this is more of a problem with the way the > >> > > > application is architected than a problem with the system I run it > >> > > > on. It's a bit of a shame that I don't feel I can support running > >> > > > TPP > >> > > > in a Linux environment. > > >> > > > On Mar 23, 6:23 pm, Brian Pratt <[email protected]> wrote: > >> > > >> Start with the "tpp_hostname: command not found" message. The > >> > > >> solution > >> > > is a > >> > > >> combination of setting the PATH for the webserver user, and > >> > > >> customizing > >> > > your > >> > > >> tpp_gui_config.pl file to tell the GUI where you installed the > >> > > >> various > >> > > >> executables. > > >> > > >> Good luck, > > >> > > >> Brian > > >> > > >> On Tue, Mar 23, 2010 at 6:20 AM, Eliza <[email protected]> > >> > > >> wrote: > >> > > >> > I posted the thread > > >> > > >> > >http://groups.google.com/group/spctools-discuss/browse_thread/thread/. > >> > > .. > >> > > >> > back in January but didn't receive any responses so I am asking > >> > > >> > again > >> > > >> > if anybody can assist. > > >> > > >> > When trying to use the TPP GUI the webserver error log is filled > >> > > >> > with > >> > > >> > the following error message: > > >> > > >> > [Fri Jan 08 14:01:42 2010] [error] [client xxx.xxx.xx.xx] sh: > >> > > >> > tpp_hostname: command not found, referer: > > >> > >http://localhost/tpp/cgi-bin/tpp_gui.pl?Action=display&page=filebrowser > > >> > > >> > I am also seeing the same error message in the GUI: > > >> > > >> > Unable to access xml file via webserver, so cannot check xml file > >> > > >> > for > >> > > >> > changes () > >> > > >> > Check webserver configuration if desired. > >> > > >> > (URL: undefined) > > >> > > >> > Debian Etch TPP version 4.3. Suggestions on how to fix this? > > >> > > >> > -- > >> > > >> > You received this message because you are subscribed to the > >> > > >> > Google > >> > > Groups > >> > > >> > "spctools-discuss" group. > >> > > >> > To post to this group, send email to > >> > > [email protected]. > >> > > >> > To unsubscribe from this group, send email to > > >> > > >> > [email protected]<spctools-discuss%[email protected]> > > >> > > <spctools-discuss%[email protected]<spctools-discuss%[email protected]> > > >> > > >> > . > >> > > >> > For more options, visit this group at > >> > > >> >http://groups.google.com/group/spctools-discuss?hl=en. > > >> > > > -- > >> > > > You received this message because you are subscribed to the Google > >> > > > Groups > >> > > "spctools-discuss" group. > >> > > > To post to this group, send email to > >> > > > [email protected]. > >> > > > To unsubscribe from this group, send email to > > >> > > [email protected]<spctools-discuss%[email protected]> > >> > > . > >> > > > For more options, visit this group at > >> > >http://groups.google.com/group/spctools-discuss?hl=en. > > >> > > -- > >> > > You received this message because you are subscribed to the Google > >> > > Groups > >> > > "spctools-discuss" group. > >> > > To post to this group, send email to > >> > > [email protected]. > >> > > To unsubscribe from this group, send email to > > >> > > [email protected]<spctools-discuss%[email protected]> > >> > > . > >> > > For more options, visit this group at > >> > >http://groups.google.com/group/spctools-discuss?hl=en. > > >> > -- > >> > You received this message because you are subscribed to the Google > >> > Groups "spctools-discuss" group. > >> > To post to this group, send email to [email protected]. > >> > To unsubscribe from this group, send email to > >> > [email protected]. > >> > For more options, visit this group > >> > athttp://groups.google.com/group/spctools-discuss?hl=en. > > >> -- > >> You received this message because you are subscribed to the Google Groups > >> "spctools-discuss" group. > >> To post to this group, send email to [email protected]. > >> To unsubscribe from this group, send email to > >> [email protected]. > >> For more options, visit this group at > >>http://groups.google.com/group/spctools-discuss?hl=en. > > > -- > > You received this message because you are subscribed to the Google Groups > > "spctools-discuss" group. > > To post to this group, send email to [email protected]. > > To unsubscribe from this group, send email to > > [email protected]. > > For more options, visit this group at > >http://groups.google.com/group/spctools-discuss?hl=en. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group > athttp://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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