Hi Eliza, Brian is right, it is difficult to debug through emails...
Though I have not configured it on linux but your issue seems to be related to environment setting (path for user, etc. as mentioned in 2nd. post) - Check your apache httpd.conf file (should be somewhere under etc/apache...) and check if webserver is working (http://localhost) - You should also try checking http:///localhost/tpp/cgi-bin/check_env.pl , to check environment Not sure if it will help but this is sample httpd.conf entry for webserver configured using cygwin... ServerRoot "/usr" Listen 81 # # ISB-Tools Trans Proteomic Pipeline directive # ScriptLog /var/logs/apache2/cgi_log AddType text/html .shtml AddHandler server-parsed .shtml SetEnv WEBSERVER_ROOT /cygdrive/c/Inetpub/wwwroot/ SetEnv WEBSERVER_URL http://localhost:81/ Alias /ISB/ "/cygdrive/c/Inetpub/wwwroot/ISB/" <Directory "/cygdrive/c/Inetpub/wwwroot/ISB/"> AllowOverride None Options Includes Indexes FollowSymLinks MultiViews Order allow,deny Allow from all </Directory> Alias /tpp-bin/ "/cygdrive/c/Inetpub/tpp-bin/" <Directory "/cygdrive/c/Inetpub/tpp-bin/"> AllowOverride AuthConfig Limit Options ExecCGI Includes Indexes MultiViews AddHandler cgi-script .cgi .pl Order allow,deny Allow from all </Directory> Thanks Vishal On Tue, May 18, 2010 at 4:06 PM, Brian Pratt <[email protected]>wrote: > I'm sorry you're having a hard time with it, but you just have to get > in there and mess around with it, or find somebody locally who will do > so for you. Getting a webserver configured on linux isn't trivial, > unfortunately, and not really the kind of thing that can be debugged > by email. > > Brian > > On Tue, May 18, 2010 at 6:52 AM, Eliza <[email protected]> wrote: > > OK well this is a shame that no one seems to be able to help on this > > one. It seems to me this is more of a problem with the way the > > application is architected than a problem with the system I run it > > on. It's a bit of a shame that I don't feel I can support running TPP > > in a Linux environment. > > > > On Mar 23, 6:23 pm, Brian Pratt <[email protected]> wrote: > >> Start with the "tpp_hostname: command not found" message. The solution > is a > >> combination of setting the PATH for the webserver user, and customizing > your > >> tpp_gui_config.pl file to tell the GUI where you installed the various > >> executables. > >> > >> Good luck, > >> > >> Brian > >> > >> On Tue, Mar 23, 2010 at 6:20 AM, Eliza <[email protected]> wrote: > >> > I posted the thread > >> >http://groups.google.com/group/spctools-discuss/browse_thread/thread/. > .. > >> > back in January but didn't receive any responses so I am asking again > >> > if anybody can assist. > >> > >> > When trying to use the TPP GUI the webserver error log is filled with > >> > the following error message: > >> > >> > [Fri Jan 08 14:01:42 2010] [error] [client xxx.xxx.xx.xx] sh: > >> > tpp_hostname: command not found, referer: > >> > > http://localhost/tpp/cgi-bin/tpp_gui.pl?Action=display&page=filebrowser > >> > >> > I am also seeing the same error message in the GUI: > >> > >> > Unable to access xml file via webserver, so cannot check xml file for > >> > changes () > >> > Check webserver configuration if desired. > >> > (URL: undefined) > >> > >> > Debian Etch TPP version 4.3. Suggestions on how to fix this? > >> > >> > -- > >> > You received this message because you are subscribed to the Google > Groups > >> > "spctools-discuss" group. > >> > To post to this group, send email to > [email protected]. > >> > To unsubscribe from this group, send email to > >> > [email protected]<spctools-discuss%[email protected]> > <spctools-discuss%[email protected]<spctools-discuss%[email protected]> > > > >> > . > >> > For more options, visit this group at > >> >http://groups.google.com/group/spctools-discuss?hl=en. > > > > -- > > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > > To post to this group, send email to [email protected]. > > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > > > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
