PATH is of interest as well. Or you could just paste all the results into a message to this list.
On Thu, May 20, 2010 at 7:38 AM, Vishal Swaroop <[email protected]> wrote: > As I have not configured TPP on linux so I am not sure if I will be of > help.... but check WEBSERVER_ROOT and SCRIPT_FILENAME = <path to > tppbin>/check_env.pl > See, if <path to tppbin> in SCRIPT_FILENAME is set in apache configuration > file httpd.conf. > As per your post description, does it mean that you are able to login and > run some of the process from gui, on what event/ click you get this error, > which browser you are using ? > Thanks > On Thu, May 20, 2010 at 4:42 AM, Eliza <[email protected]> wrote: >> >> The webserver is working fine, it is used to host a couple other sites >> and they aren't experiencing any issues :-) >> >> I ran check_env.pl but I am not sure what I should which values I >> should be verifying, can you provide any advice here? >> >> On May 19, 12:01 am, Vishal Swaroop <[email protected]> wrote: >> > Hi Eliza, >> > >> > Brian is right, it is difficult to debug through emails... >> > >> > Though I have not configured it on linux but your issue seems to be >> > related >> > to environment setting (path for user, etc. as mentioned in 2nd. post) >> > >> > - Check your apache httpd.conf file (should be somewhere under >> > etc/apache...) and check if webserver is working (http://localhost) >> > - You should also try checking >> > http:///localhost/tpp/cgi-bin/check_env.pl , >> > to check environment >> > >> > Not sure if it will help but this is sample httpd.conf entry for >> > webserver >> > configured using cygwin... >> > >> > ServerRoot "/usr" >> > Listen 81 >> > # >> > # ISB-Tools Trans Proteomic Pipeline directive >> > # >> > ScriptLog /var/logs/apache2/cgi_log >> > AddType text/html .shtml >> > AddHandler server-parsed .shtml >> > SetEnv WEBSERVER_ROOT /cygdrive/c/Inetpub/wwwroot/ >> > SetEnv WEBSERVER_URLhttp://localhost:81/ >> > >> > Alias /ISB/ "/cygdrive/c/Inetpub/wwwroot/ISB/" >> > <Directory "/cygdrive/c/Inetpub/wwwroot/ISB/"> >> > AllowOverride None >> > Options Includes Indexes FollowSymLinks MultiViews >> > Order allow,deny >> > Allow from all >> > </Directory> >> > >> > Alias /tpp-bin/ "/cygdrive/c/Inetpub/tpp-bin/" >> > <Directory "/cygdrive/c/Inetpub/tpp-bin/"> >> > AllowOverride AuthConfig Limit >> > Options ExecCGI Includes Indexes MultiViews >> > AddHandler cgi-script .cgi .pl >> > Order allow,deny >> > Allow from all >> > </Directory> >> > >> > Thanks >> > Vishal >> > >> > On Tue, May 18, 2010 at 4:06 PM, Brian Pratt >> > <[email protected]>wrote: >> > >> > >> > >> > > I'm sorry you're having a hard time with it, but you just have to get >> > > in there and mess around with it, or find somebody locally who will do >> > > so for you. Getting a webserver configured on linux isn't trivial, >> > > unfortunately, and not really the kind of thing that can be debugged >> > > by email. >> > >> > > Brian >> > >> > > On Tue, May 18, 2010 at 6:52 AM, Eliza <[email protected]> >> > > wrote: >> > > > OK well this is a shame that no one seems to be able to help on this >> > > > one. It seems to me this is more of a problem with the way the >> > > > application is architected than a problem with the system I run it >> > > > on. It's a bit of a shame that I don't feel I can support running >> > > > TPP >> > > > in a Linux environment. >> > >> > > > On Mar 23, 6:23 pm, Brian Pratt <[email protected]> wrote: >> > > >> Start with the "tpp_hostname: command not found" message. The >> > > >> solution >> > > is a >> > > >> combination of setting the PATH for the webserver user, and >> > > >> customizing >> > > your >> > > >> tpp_gui_config.pl file to tell the GUI where you installed the >> > > >> various >> > > >> executables. >> > >> > > >> Good luck, >> > >> > > >> Brian >> > >> > > >> On Tue, Mar 23, 2010 at 6:20 AM, Eliza <[email protected]> >> > > >> wrote: >> > > >> > I posted the thread >> > > >> >> > > >> > >http://groups.google.com/group/spctools-discuss/browse_thread/thread/. >> > > .. >> > > >> > back in January but didn't receive any responses so I am asking >> > > >> > again >> > > >> > if anybody can assist. >> > >> > > >> > When trying to use the TPP GUI the webserver error log is filled >> > > >> > with >> > > >> > the following error message: >> > >> > > >> > [Fri Jan 08 14:01:42 2010] [error] [client xxx.xxx.xx.xx] sh: >> > > >> > tpp_hostname: command not found, referer: >> > >> > >http://localhost/tpp/cgi-bin/tpp_gui.pl?Action=display&page=filebrowser >> > >> > > >> > I am also seeing the same error message in the GUI: >> > >> > > >> > Unable to access xml file via webserver, so cannot check xml file >> > > >> > for >> > > >> > changes () >> > > >> > Check webserver configuration if desired. >> > > >> > (URL: undefined) >> > >> > > >> > Debian Etch TPP version 4.3. Suggestions on how to fix this? >> > >> > > >> > -- >> > > >> > You received this message because you are subscribed to the >> > > >> > Google >> > > Groups >> > > >> > "spctools-discuss" group. >> > > >> > To post to this group, send email to >> > > [email protected]. >> > > >> > To unsubscribe from this group, send email to >> > > >> > >> > > >> > [email protected]<spctools-discuss%[email protected]> >> > > >> > > <spctools-discuss%[email protected]<spctools-discuss%[email protected]> >> > >> > > >> > . >> > > >> > For more options, visit this group at >> > > >> >http://groups.google.com/group/spctools-discuss?hl=en. >> > >> > > > -- >> > > > You received this message because you are subscribed to the Google >> > > > Groups >> > > "spctools-discuss" group. >> > > > To post to this group, send email to >> > > > [email protected]. >> > > > To unsubscribe from this group, send email to >> > > >> > > [email protected]<spctools-discuss%[email protected]> >> > > . >> > > > For more options, visit this group at >> > >http://groups.google.com/group/spctools-discuss?hl=en. >> > >> > > -- >> > > You received this message because you are subscribed to the Google >> > > Groups >> > > "spctools-discuss" group. >> > > To post to this group, send email to >> > > [email protected]. >> > > To unsubscribe from this group, send email to >> > > >> > > [email protected]<spctools-discuss%[email protected]> >> > > . >> > > For more options, visit this group at >> > >http://groups.google.com/group/spctools-discuss?hl=en. >> > >> > -- >> > You received this message because you are subscribed to the Google >> > Groups "spctools-discuss" group. >> > To post to this group, send email to [email protected]. >> > To unsubscribe from this group, send email to >> > [email protected]. >> > For more options, visit this group >> > athttp://groups.google.com/group/spctools-discuss?hl=en. >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To post to this group, send email to [email protected]. >> To unsubscribe from this group, send email to >> [email protected]. >> For more options, visit this group at >> http://groups.google.com/group/spctools-discuss?hl=en. >> > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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