Did you try Jimmy's command? Msconvert can certainly write MS2+ spectra to MGF.
-Matt
On 9/15/2010 10:14 AM, chunchao wrote:
I tried this way but it failed too. Now I doubt if msconvert could do
that. Anyway, thx!
On 9/14/2010 12:38 PM, Jimmy Eng wrote:
try something like: msconvert --mgf yourfile.mzXML
On Tue, Sep 14, 2010 at 10:02 AM, chunchao<[email protected]> wrote:
Here is what I did. I generate a mzXML from Thermo RAW data using
ReAdW. Then I ran msconvert to try to get a mgf file from that mzXML
generated from RAW data (The command was: msconvert --.mzXML --.mgf;
also tried other ways like: msconvert --.mgf --.mzXML etc). But the
software always generate a mzML file instead of a mgf file. I don't
what's wrong with my conversion. Anyone has ideas? Thx!
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