I downloaded a newest TTP version and reinstalled on PC. This problem
was sovled. It looks like the previous version can't deal with this
problem. Thank you!

On Sep 15, 4:11 pm, Matthew Chambers <[email protected]>
wrote:
>   What do you mean "it's already in cygwin" ? Just run msconvert without 
> arguments to get version information at the bottom. But I didn't even realize 
> you were
> running in cygwin. Did you try running it from the default cmd.exe prompt?
>
> -Matt
>
> On 9/15/2010 3:07 PM, chunchao wrote:
>
>
>
> > Definitely, 2 dashes. My OS is windows XP. I don't know the version of
> > msconvert because its already in cygwin.
>
> > On Sep 15, 3:50 pm, Matthew Chambers<[email protected]>
> > wrote:
> >>    Are you sure you put two dashes? You will get that error if you only 
> >> put one dash. If you're putting two dashes and still see that error, 
> >> something very odd
> >> is happening. If that's the case, what version of msconvert? Is it a 
> >> non-English Windows? Are the localization settings set to something other 
> >> than the default?
>
> >> -Matt
>
> >> On 9/15/2010 2:36 PM, chunchao wrote:
>
> >>> yes, I did.
> >>> For msconvert --mgf yourfile.mzXML, it says unkown option -m.- Hide 
> >>> quoted text -
> >> - Show quoted text -- Hide quoted text -
>
> - Show quoted text -

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