yes, I did. For msconvert --mgf yourfile.mzXML, it says unkown option -m. On Sep 15, 11:20 am, Matthew Chambers <[email protected]> wrote: > Did you try Jimmy's command? Msconvert can certainly write MS2+ spectra to > MGF. > > -Matt > > On 9/15/2010 10:14 AM, chunchao wrote: > > > I tried this way but it failed too. Now I doubt if msconvert could do > > that. Anyway, thx! > > On 9/14/2010 12:38 PM, Jimmy Eng wrote: > > > > > try something like: msconvert --mgf yourfile.mzXML > > > On Tue, Sep 14, 2010 at 10:02 AM, chunchao<[email protected]> wrote: > >> Here is what I did. I generate a mzXML from Thermo RAW data using > >> ReAdW. Then I ran msconvert to try to get a mgf file from that mzXML > >> generated from RAW data (The command was: msconvert --.mzXML --.mgf; > >> also tried other ways like: msconvert --.mgf --.mzXML etc). But the > >> software always generate a mzML file instead of a mgf file. I don't > >> what's wrong with my conversion. Anyone has ideas? Thx!- Hide quoted text - > > - Show quoted text -
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