I speculate that Proteome Discoverer was written for an older version of the mzXML schema and some of the newer attributes and/or elements are giving it
trouble. But if that's the case it must be doing some schematic validation like Mascot does because I don't recall any attributes and/or elements that have been
/removed/ since 2.0. Have you asked a Thermo representative? Is there a specific error message?
-Matt
On 10/19/2010 1:07 PM, Jeffrey Milloy wrote:
Hi there again
I am using Thermo's Proteome Discover to do some testing with SEQUEST
searches. You can input a RAW file or an mzXML for the search, and
Discoverer handles the rest.
mzXMLs produced with ReAdW 4.0.2 work just fine.
mzXMLs produced with ReAdW 4.3.1 do *not* work.
mzXMLs produced with msconvert do *not* work.
Discoverer says that they are invalid mzXML files and does not load
them. Any thoughts? Anyone else using ReAdW and Discoverer? Is this
more likely to be a problem with ReAdW/msconvert or with Discoverer?
MzXML2Search seems to be able to handle the different mzXMLs just
fine.
Jeff
TPP 4.4 (winxp install)
Thermo Proteome Discoverer 1.2
--
You received this message because you are subscribed to the Google Groups
"spctools-discuss" group.
To post to this group, send email to [email protected].
To unsubscribe from this group, send email to
[email protected].
For more options, visit this group at
http://groups.google.com/group/spctools-discuss?hl=en.
