I suspect you're correct, but i'm surprised, too. Actually, it doesn't say that the mzXml is invalid (as I originally posted), only unsupported. The error message: "The specified file is not a supported mzXml format".
When launching a Mascot search, the message is also vague: "Exception of type 'System.OutOfMemoryException' was thrown". I have an old msXML2Other lying around, which gives "Peak data exceeds peak count." I wondered if it's the same root problem. Thanks. I should contact Thermo, you're right. Jeff On Tue, Oct 19, 2010 at 2:21 PM, Matthew Chambers <[email protected] > wrote: > I speculate that Proteome Discoverer was written for an older version of > the mzXML schema and some of the newer attributes and/or elements are giving > it trouble. But if that's the case it must be doing some schematic > validation like Mascot does because I don't recall any attributes and/or > elements that have been /removed/ since 2.0. Have you asked a Thermo > representative? Is there a specific error message? > > -Matt > > > > On 10/19/2010 1:07 PM, Jeffrey Milloy wrote: > >> Hi there again >> >> I am using Thermo's Proteome Discover to do some testing with SEQUEST >> searches. You can input a RAW file or an mzXML for the search, and >> Discoverer handles the rest. >> >> mzXMLs produced with ReAdW 4.0.2 work just fine. >> mzXMLs produced with ReAdW 4.3.1 do *not* work. >> mzXMLs produced with msconvert do *not* work. >> >> Discoverer says that they are invalid mzXML files and does not load >> them. Any thoughts? Anyone else using ReAdW and Discoverer? Is this >> more likely to be a problem with ReAdW/msconvert or with Discoverer? >> >> MzXML2Search seems to be able to handle the different mzXMLs just >> fine. >> >> >> Jeff >> >> >> TPP 4.4 (winxp install) >> Thermo Proteome Discoverer 1.2 >> >> > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
