Hi all!

Let me start by wishing you all good health in 2011!

Now for my question: does anyone have any experience with X! TANDEM
CYCLONE (2010.12.01.1) together with the TPP?
My version in TPP is X! TANDEM 2009.10.01.1 (LabKey and ISB) and it
works fine, but I wanted to try the new version. However, the output
in X!tandem is now output.xml (not output.tandem) and I cannot get the
peptideprophet to handle the output.xml file.
Also, in the parameter file that comes with it, I noticed the kscore
settings are gone...

Any suggestions/comments?

Kind regards,
Bjorn


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