Hello Brian! Thanks for the quick reply.
I only played with CYCLONE a little bit, but I got the impression that a database search is faster. Furthermore, the improved scoring for ETD (as claimed on the website) might come in useful at a later time in my work. I don't have any mzML files or mixed ETD/CID spectra, so those features are not important for me. I tried to output a .tandem file and convert it to a tandem.pep.xml. That worked. I then tried peptide prophet, but could not open the resulting interact.pep.xml file with the xml viewer... I'll look into that in more detail tomorrow. As I said in my first mail, my current X!Tandem is doing the job just fine (with k-scoring enabled). It was more curiosity than something else that made me try out the new version. Bjorn -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
