Thanks again.  Sorry about confusion, I thought msconvert represented a
group of conversion tools, which included mzWiff.  If possible, please could
you direct me to a site to download the msconvert tool, i have not been able
to locate a server

I have downloaded Skyline and I am using Windows 7, 64 bit (compatibility
with 32 bit programs)

Zac

On Wed, Jan 5, 2011 at 6:49 PM, Matthew Chambers
<[email protected]>wrote:

> MzWiff and msconvert are different software. The former requires Analyst,
> the latter does not. Doesn't your subject "ms convert" refer to the
> msconvert tool? If so, what happened with msconvert after you downloaded
> Skyline? And what Windows OS?
>
> -Matt
>
>
>
> On 1/5/2011 6:11 AM, Zac McDonald wrote:
>
>> Thanks Matt
>> I have tried downloading Skyline but i am still not able to convert wiff
>> files.  On the wiki page for mzWiff, the tool that does the conversion, it
>> states that
>> the Analyst library is required.  Have you been able to convert wiff files
>> (ABSCIEX) to mzXML without the Analyst software installed on your PC?
>> Thanks again
>> Zac
>>
>> On Mon, Jan 3, 2011 at 7:06 PM, Matthew Chambers <
>> [email protected] <mailto:[email protected]>> wrote:
>>
>>    Msconvert versions before 2.1.2403 required Protein Pilot 3 to be
>> installed in order to convert WIFFs. Starting with 2403, msconvert can
>> convert WIFFs with
>>    either Protein Pilot 3 OR Skyline. The former is no longer available at
>> all (and Protein Pilot 4 does not work as a substitute), but the latter is
>> freely
>>    available from:
>>
>> https://brendanx-uw1.gs.washington.edu/labkey/project/home/software/Skyline/begin.view
>>
>>    -Matt
>>
>>
>>
>>    On 1/3/2011 3:24 AM, Zac wrote:
>>
>>        I would like to convert AB SCIEX .wiff files into mzXML format but
>> i
>>        do not have any analyst software installed on my computer.  Do i
>> have
>>        to have analyst installed, is there any way to convert files
>> without
>>        analyst?
>>
>>        Thanks
>>
>>        Zac Mc Donald
>>        University of Cape Town
>>        South Africa
>>
>
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