hi,
I'm trying to use TPP v4.4 to analyze my multiple Mascot dat
search result files. It works in analyzing few dat files in my hands,
but when I tried to analyze ~30 files, the PepXMLViewer.cig is
generating a huge file named as interact.pep.xml.index (>3G now, and
still growing..). My question is: is it normal to have such a huge
file, or is it a bug? It may be worth noting that my dat files are not
stored in c:/Inetpub/wwwroot/ISB/data/, but in a D drive.
My protocols are as below (executed in DOS):
1, convert dat to pepXML using Mascot2XML.
2, convert multiple (~30) pepXML to interact.pep.xml using xinteract.
It shows:
>running: "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml"
>MINPROB=0.05"
...
>running: "C:/Inetpub/tpp-bin/ProphetModels.pl -i interact.pep.xml"
...
>running: "C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml""
...
>running: "C:/Inetpub/tpp-bin/RefreshParser "interact.pep.xml"
>"c:/Inetpub/wwwroot/ISB/db/myDatabase.fasta""
...
>>running: "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I
>>d:/myMSdata/interact.pep.xml"
3, I noticed there was a file named as interact.pep.xml had been
generated rapidly, but the last command in step 2 is still generating
huge interact.pep.xml.index which slowly grows to >3G, and it is still
growing.
A warning showed several time is as below:
problem (ph8): d:/myMSdata/interact.pep.xml is not mounted under
webserver root: c:/Inetpub/wwwroot/
Thanks a lot!
Best regards,
Tiannan
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